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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
122.1
Sample id
Sample description
nTPM
Amygdala nTPM: 63.6
1987
Female, age 91, left hemisphere
254.5
2517
Female, age 94, left hemisphere
29.8
2514
Male, age 75, right hemisphere
22.2
2695
Female, age 67, right hemisphere
8.3
2814
Male, age 76, right hemisphere
3.3
Basal amygdala nTPM: 33.4
1955
Male, age 76, both hemispheres
45.9
2110
Male, age 80, left hemisphere
42.6
2685
Female, age 94, left hemisphere
37.3
2827
Female, age 67, right hemisphere
27.7
2609
Male, age 75, right hemisphere
24.4
2243
Female, age 91, right hemisphere
22.8
Central amygdala nTPM: 122.1
2701
Female, age 91, right hemisphere
451.4
2239
Male, age 80, left hemisphere
69.3
2515
Male, age 75, right hemisphere
58.2
2826
Female, age 94, left hemisphere
28.1
1905
Male, age 76, both hemispheres
3.6
Corticomedial amygdala nTPM: 70.6
2429
Female, age 94, left hemisphere
123.2
2829
Male, age 80, left hemisphere
94.6
2240
Male, age 76, both hemispheres
80.9
2535
Female, age 67, right hemisphere
73.4
2428
Male, age 75, right hemisphere
28.6
2242
Female, age 91, right hemisphere
23.3
Lateral amygdala nTPM: 54.8
2255
Female, age 91, right hemisphere
193.9
1883
Male, age 76, both hemispheres
32.0
2516
Male, age 75, right hemisphere
29.6
2256
Male, age 80, left hemisphere
26.5
2830
Female, age 67, right hemisphere
26.1
2534
Female, age 94, left hemisphere
20.5
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
154.8
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 154.8
Samples: 152
Max nTPM: 857.7
Min nTPM: 4.9
Std nTPM: 143.9
Median nTPM: 113.9
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
857.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
792.2
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
598.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
574.4
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
438.0
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
432.5
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
422.4
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
418.3
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
396.1
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
371.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
368.9
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
361.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
349.6
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
348.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
332.9
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
331.8
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
329.1
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
325.2
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
320.4
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
314.5
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
313.8
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
309.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
305.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
303.9
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
298.9
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
288.4
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
285.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
272.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
267.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
264.0
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
263.8
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
255.8
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
250.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
242.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
240.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
237.2
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
226.0
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
217.3
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
214.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
210.8
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
209.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
208.0
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
204.9
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
191.9
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
191.7
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
190.7
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
185.1
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
182.9
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
180.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
176.5
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
160.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
157.9
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
157.3
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
150.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
148.4
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
145.8
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
145.7
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
144.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
144.2
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
143.2
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
137.9
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
135.7
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
135.1
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
134.9
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
134.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
133.2
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
132.7
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
129.9
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
129.9
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
122.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
122.5
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
121.5
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
119.0
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
116.7
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
116.0
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
114.1
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
113.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
113.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
112.2
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
111.3
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
111.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
104.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
99.6
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
98.7
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
98.6
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
98.2
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
95.1
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
93.8
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
93.3
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
93.0
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
91.1
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
91.0
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
86.8
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
86.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
85.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
83.8
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
83.1
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
82.9
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
81.3
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
76.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
70.8
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
62.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
61.3
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
60.8
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
59.8
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
57.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
53.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
52.2
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
52.0
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
50.7
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
48.7
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
48.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
47.8
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
47.1
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
46.8
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
46.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
46.1
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
44.9
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
44.4
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
43.8
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
42.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
42.8
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
39.9
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
39.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
38.8
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
38.7
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
38.0
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
35.4
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
35.0
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
33.7
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
32.6
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
32.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
30.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
28.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
27.5
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
23.4
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
22.9
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
22.6
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
21.1
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
17.8
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
17.5
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
14.9
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
14.7
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
14.7
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
14.7
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
13.9
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
12.6
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
11.7
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
10.6
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
9.3
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
6.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
4.9
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
594.4
Mouse sample
Sample description
nTPM
Amygdala nTPM: 594.4
Samples: 4
Max nTPM: 667.4
Min nTPM: 521.7
Sample A
Male
616.8
Sample B
Male
571.5
Sample C
Female
667.4
Sample D
Female
521.7
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.