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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCDH1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
50.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
45.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
41.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
40.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
40.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
30.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
29.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
4.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCDH1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
48.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
42.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
30.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
911
Tumor
1.0
867
Tumor
1.0
445
Tumor
0.9
861
Tumor
0.8
742
Normal
0.8
1046
Normal
0.8
484
Normal
0.8
617
Tumor
0.8
944
Normal
0.7
1043
Tumor
0.7
884
Normal
0.7
915
Tumor
0.7
471
Tumor
0.7
786
Normal
0.7
824
Normal
0.7
1031
Tumor
0.7
415
Tumor
0.7
955
Tumor
0.7
648
Normal
0.6
878
Normal
0.6
1041
Tumor
0.6
396
Normal
0.6
1022
Normal
0.6
918
Normal
0.6
327
Tumor
0.6
862
Normal
0.6
714
Normal
0.6
462
Normal
0.6
526
Normal
0.6
528
Normal
0.6
636
Normal
0.6
813
Tumor
0.6
912
Normal
0.6
858
Normal
0.6
353
Tumor
0.6
554
Normal
0.6
483
Tumor
0.6
922
Normal
0.6
218
Normal
0.6
698
Normal
0.6
534
Normal
0.5
222
Normal
0.5
964
Normal
0.5
482
Normal
0.5
416
Normal
0.5
514
Normal
0.5
1027
Tumor
0.5
481
Tumor
0.5
231
Tumor
0.5
1016
Normal
0.5
286
Normal
0.5
968
Normal
0.5
546
Normal
0.5
472
Normal
0.5
395
Tumor
0.5
488
Normal
0.5
1032
Normal
0.5
132
Normal
0.5
448
Normal
0.5
196
Normal
0.5
756
Normal
0.5
746
Normal
0.4
723
Tumor
0.4
474
Normal
0.4
518
Normal
0.4
452
Normal
0.4
618
Normal
0.4
727
Tumor
0.4
958
Normal
0.4
1028
Normal
0.4
868
Normal
0.4
356
Normal
0.4
191
Tumor
0.4
926
Normal
0.4
162
Normal
0.4
616
Normal
0.4
716
Normal
0.4
388
Normal
0.4
866
Normal
0.4
364
Normal
0.4
1045
Tumor
0.4
882
Normal
0.4
984
Normal
0.4
745
Tumor
0.4
422
Normal
0.4
982
Normal
0.4
664
Normal
0.4
938
Normal
0.4
1026
Normal
0.4
738
Normal
0.4
212
Normal
0.4
127
Tumor
0.4
515
Tumor
0.4
568
Normal
0.4
1042
Normal
0.4
978
Normal
0.4
864
Normal
0.4
1014
Normal
0.4
414
Normal
0.4
145
Tumor
0.4
696
Normal
0.4
558
Normal
0.4
426
Normal
0.4
464
Normal
0.4
744
Normal
0.4
628
Normal
0.4
148
Normal
0.4
818
Normal
0.3
572
Normal
0.3
924
Normal
0.3
778
Normal
0.3
642
Normal
0.3
258
Normal
0.3
376
Normal
0.3
312
Normal
0.3
114
Normal
0.3
284
Normal
0.3
477
Tumor
0.3
431
Tumor
0.3
136
Normal
0.3
271
Tumor
0.3
816
Normal
0.3
728
Normal
0.3
662
Normal
0.3
564
Normal
0.3
328
Normal
0.3
494
Normal
0.3
392
Normal
0.3
424
Normal
0.3
436
Normal
0.3
368
Normal
0.3
976
Normal
0.3
468
Normal
0.3
685
Tumor
0.3
446
Normal
0.3
686
Normal
0.3
1044
Normal
0.3
412
Normal
0.3
914
Normal
0.3
128
Normal
0.3
954
Normal
0.2
466
Normal
0.2
428
Normal
0.2
641
Tumor
0.2
557
Tumor
0.2
983
Tumor
0.2
883
Tumor
0.2
214
Normal
0.2
627
Tumor
0.2
267
Tumor
0.2
516
Normal
0.2
937
Tumor
0.2
314
Normal
0.2
186
Normal
0.2
574
Normal
0.2
228
Normal
0.2
952
Normal
0.2
342
Normal
0.2
524
Normal
0.2
737
Tumor
0.2
493
Tumor
0.2
111
Normal
0.2
358
Normal
0.2
172
Normal
0.2
456
Normal
0.2
147
Tumor
0.2
966
Normal
0.2
352
Normal
0.2
672
Normal
0.2
146
Normal
0.2
298
Normal
0.2
278
Normal
0.2
666
Normal
0.2
261
Tumor
0.2
956
Normal
0.1
874
Normal
0.1
823
Tumor
0.1
527
Tumor
0.1
332
Normal
0.1
513
Tumor
0.1
467
Tumor
0.1
126
Normal
0.1
268
Normal
0.1
432
Normal
0.1
232
Normal
0.1
357
Tumor
0.1
272
Normal
0.1
615
Tumor
0.1
722
Normal
0.1
192
Normal
0.1
741
Tumor
0.1
923
Tumor
0.1
916
Normal
0.1
444
Normal
0.1
366
Normal
0.1
138
Normal
0.1
217
Tumor
0.1
814
Normal
0.1
394
Normal
0.1
365
Tumor
0.1
447
Tumor
0.1
852
Normal
0.1
142
Normal
0.1
224
Normal
0.1
498
Normal
0.1
423
Tumor
0.0
227
Tumor
0.0
362
Normal
0.0
311
Tumor
0.0
112
Tumor
0.0
384
Normal
0.0
451
Tumor
0.0
492
Normal
0.0
857
Tumor
0.0
187
Tumor
0.0
354
Normal
0.0
461
Tumor
0.0
951
Tumor
0.0
213
Tumor
0.0
851
Tumor
0.0
538
Normal
0.0
863
Tumor
0.0
715
Tumor
0.0
873
Tumor
0.0
953
Tumor
0.0
536
Normal
0.0
647
Tumor
-0.1
262
Normal
-0.1
188
Normal
-0.1
925
Tumor
-0.1
386
Normal
-0.1
963
Tumor
-0.1
865
Tumor
-0.1
755
Tumor
-0.1
913
Tumor
-0.1
478
Normal
-0.1
344
Normal
-0.1
137
Tumor
-0.1
435
Tumor
-0.1
413
Tumor
-0.1
917
Tumor
-0.1
141
Tumor
-0.1
517
Tumor
-0.1
355
Tumor
-0.2
387
Tumor
-0.2
341
Tumor
-0.2
421
Tumor
-0.2
785
Tumor
-0.2
135
Tumor
-0.2
195
Tumor
-0.2
411
Tumor
-0.3
981
Tumor
-0.3
1021
Tumor
-0.3
124
Normal
-0.3
977
Tumor
-0.3
563
Tumor
-0.3
957
Tumor
-0.3
455
Tumor
-0.3
545
Tumor
-0.3
713
Tumor
-0.3
113
Tumor
-0.3
567
Tumor
-0.3
297
Tumor
-0.3
1015
Tumor
-0.3
434
Normal
-0.4
943
Tumor
-0.4
361
Tumor
-0.4
367
Tumor
-0.4
665
Tumor
-0.4
721
Tumor
-0.4
525
Tumor
-0.4
285
Tumor
-0.4
161
Tumor
-0.4
967
Tumor
-0.4
1013
Tumor
-0.4
363
Tumor
-0.4
535
Tumor
-0.4
331
Tumor
-0.5
975
Tumor
-0.5
185
Tumor
-0.5
695
Tumor
-0.5
171
Tumor
-0.5
815
Tumor
-0.5
223
Tumor
-0.5
571
Tumor
-0.5
433
Tumor
-0.5
123
Tumor
-0.6
473
Tumor
-0.6
277
Tumor
-0.6
663
Tumor
-0.6
497
Tumor
-0.6
965
Tumor
-0.6
427
Tumor
-0.6
375
Tumor
-0.6
697
Tumor
-0.7
881
Tumor
-0.7
257
Tumor
-0.7
313
Tumor
-0.7
465
Tumor
-0.7
391
Tumor
-0.7
553
Tumor
-0.7
777
Tumor
-0.7
491
Tumor
-0.7
383
Tumor
-0.7
537
Tumor
-0.8
877
Tumor
-0.8
1025
Tumor
-0.9
131
Tumor
-0.9
385
Tumor
-0.9
671
Tumor
-0.9
221
Tumor
-1.0
817
Tumor
-1.0
921
Tumor
-1.1
351
Tumor
-1.1
635
Tumor
-1.1
443
Tumor
-1.2
743
Tumor
-1.2
724
Normal
-1.2
283
Tumor
-1.2
533
Tumor
-1.2
463
Tumor
-1.2
523
Tumor
-1.2
211
Tumor
-1.2
343
Tumor
-1.3
125
Tumor
-1.3
425
Tumor
-1.4
487
Tumor
-1.4
393
Tumor
-1.5
573
Tumor
-1.6
661
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
