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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
54.9
nTPM
HPA Brain:
196.2
nTPM
GTEx:
54.9
nTPM
FANTOM5:
364.1
Scaled Tags Per Million
Pig:
234.7
nTPM
Mouse:
326.5
nTPM
Allen mouse:
20.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA035202
Glial cells
Not detected
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
196.2
Sample id
Sample description
nTPM
Hippocampus nTPM: 147.0
2148
Female, age 91, left hemisphere
189.8
2621
Female, age 67, right hemisphere
163.8
1855
Male, age 76, left hemisphere
160.9
1898
Male, age 80, left hemisphere
151.9
1911
Female, age 85, right hemisphere
142.3
2529
Female, age 94, left hemisphere
73.4
Dentate gyrus nTPM: 153.3
1927
Female, age 91, both hemispheres
293.3
2010
Male, age 76, both hemispheres
143.1
2531
Female, age 67, both hemispheres
137.4
2528
Male, age 74, both hemispheres
135.0
2246
Female, age 85, both hemispheres
127.6
2530
Female, age 94, left hemisphere
83.6
Entorhinal gyrus nTPM: 75.2
2764
Male, age 80, right hemisphere
89.0
2686
Male, age 75, right hemisphere
80.1
1938
Female, age 85, left hemisphere
76.8
2613
Female, age 94, left hemisphere
74.9
1787
Male, age 76, left hemisphere
68.2
2117
Female, age 91, right hemisphere
62.2
Hippocampus, CA1 nTPM: 196.2
2749
Male, age 80, left hemisphere
332.3
2045
Male, age 76, both hemispheres
189.3
1873
Female, age 85, both hemispheres
169.8
2527
Male, age 74, both hemispheres
152.1
2082
Female, age 91, right hemisphere
137.5
Hippocampus, CA2 nTPM: 132.8
1892
Male, age 76, both hemispheres
203.0
1963
Male, age 80, left hemisphere
178.7
2249
Male, age 74, both hemispheres
152.7
2113
Female, age 91, right hemisphere
128.2
1940
Female, age 85, left hemisphere
79.1
2437
Female, age 94, left hemisphere
55.5
Hippocampus, CA3 nTPM: 173.8
2137
Male, age 80, left hemisphere
297.4
2620
Female, age 94, left hemisphere
192.9
1867
Male, age 76, both hemispheres
163.2
2436
Male, age 74, both hemispheres
150.5
2861
Female, age 67, both hemispheres
143.6
1891
Female, age 85, both hemispheres
95.4
Parahippocampal cortex nTPM: 91.1
2245
Female, age 91, both hemispheres
159.3
2250
Female, age 67, right hemisphere
107.0
2693
Female, age 94, both hemispheres
104.5
2018
Male, age 76, both hemispheres
103.0
1850
Male, age 80, both hemispheres
91.8
1933
Female, age 85, both hemispheres
78.6
1990
Female, age 91, right hemisphere
72.7
2532
Female, age 72, left hemisphere
71.7
2622
Female, age 67, right hemisphere
70.9
2692
Male, age 74, both hemispheres
51.5
Perirhinal gyrus nTPM: 97.6
1847
Female, age 91, left hemisphere
139.3
2521
Female, age 94, right hemisphere
101.7
1794
Male, age 80, right hemisphere
90.5
2848
Male, age 76, right hemisphere
84.8
1841
Female, age 85, right hemisphere
71.5
Subiculum nTPM: 88.0
1901
Male, age 80, both hemispheres
134.9
2042
Male, age 76, both hemispheres
115.5
2729
Female, age 91, right hemisphere
101.7
1977
Female, age 85, both hemispheres
68.4
2619
Male, age 74, both hemispheres
65.3
2438
Female, age 94, left hemisphere
41.8
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
54.9
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 54.9
Samples: 197
Max nTPM: 154.7
Min nTPM: 0.5
Std nTPM: 36.4
Median nTPM: 45.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
154.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
146.8
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
144.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
142.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
139.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
136.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
134.6
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
131.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
130.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
124.0
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
123.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
121.8
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
118.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
116.5
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
116.4
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
113.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
112.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
111.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
110.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
109.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
109.8
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
108.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
107.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
105.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
103.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
101.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
101.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
100.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
100.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
98.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
97.6
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
97.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
97.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
96.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
96.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
95.6
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
94.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
93.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
93.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
92.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
91.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
91.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
88.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
87.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
87.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
85.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
82.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
80.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
80.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
78.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
77.9
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
77.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
77.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
77.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
75.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
74.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
73.5
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
73.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
73.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
72.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
72.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
69.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
68.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
68.2
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
67.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
67.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
66.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
66.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
61.5
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
61.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
60.1
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
60.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
60.0
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
59.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
57.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
56.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
55.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
55.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
54.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
53.9
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
53.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
52.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
52.2
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
51.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
51.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
50.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
50.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
50.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
49.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
48.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
48.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
48.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
47.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
47.5
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
47.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
46.6
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
46.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
46.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
45.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
45.4
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
45.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
44.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
44.3
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
42.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
41.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
41.8
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
41.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
40.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
40.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
40.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
40.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
40.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
40.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
39.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
39.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
39.1
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
38.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
37.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
37.7
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
36.9
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
36.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
36.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
35.8
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
35.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
34.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
33.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
33.8
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
33.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
33.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
33.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
32.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
32.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
31.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
31.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
31.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
31.2
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
30.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
30.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
29.9
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
29.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
28.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
27.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
27.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
27.5
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
27.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
27.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
26.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
26.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
26.6
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
26.6
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
26.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
25.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
25.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
24.9
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
24.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
24.5
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
24.0
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
23.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
23.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
23.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
22.8
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
22.6
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
22.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
21.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
21.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
21.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
19.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
19.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
19.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
18.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
17.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
17.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
17.2
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
17.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
16.5
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
15.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
15.1
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
14.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
14.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
13.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
13.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
13.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
12.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
9.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
7.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
7.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
7.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
6.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
6.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
6.2
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
5.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
3.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
3.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
3.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
2.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
2.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
0.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
326.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 140.6
Samples: 4
Max nTPM: 191.2
Min nTPM: 97.1
Sample A
Male
133.5
Sample B
Male
97.1
Sample C
Female
191.2
Sample D
Female
140.5
Hippocampal formation nTPM: 326.5
Samples: 4
Max nTPM: 391.1
Min nTPM: 267.4
Sample A
Male
278.2
Sample B
Male
369.3
Sample C
Female
391.1
Sample D
Female
267.4
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.