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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
23.5
nTPM
HPA Brain:
25.3
nTPM
GTEx:
23.5
nTPM
FANTOM5:
93.4
Scaled Tags Per Million
Pig:
41.2
nTPM
Mouse:
30.0
nTPM
Allen mouse:
2.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
25.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 18.9
2019
Male, age 18, unknown
32.3
1833
Male, age 53, unknown
24.5
2411
Female, age 72, unknown
24.4
1870
Female, age 42, unknown
22.6
1830
Male, age 51, unknown
22.2
2219
Male, age 76, both hemispheres
19.1
2828
Female, age 72, unknown
15.2
2666
Male, age 74, left hemisphere
14.4
1827
Male, age 72, unknown
12.2
2586
Male, age 75, left hemisphere
2.4
Dorsal raphe nucleus nTPM: 21.1
2016
Female, age 72, unknown
29.3
2298
Female, age 72, unknown
24.7
1828
Male, age 53, unknown
21.0
2750
Male, age 76, both hemispheres
17.4
2047
Male, age 72, unknown
12.9
Inferior colliculus nTPM: 17.6
2097
Female, age 72, unknown
23.8
1848
Female, age 42, unknown
18.3
1890
Male, age 53, unknown
15.0
2849
Male, age 72, unknown
13.5
Median raphe nucleus nTPM: 15.2
2220
Male, age 76, midline
15.2
Periaquaductal grey, anterior nTPM: 14.6
2502
Female, age 75, unknown
17.5
1947
Male, age 18, unknown
14.4
1795
Male, age 51, unknown
11.9
Periaquaductal grey, dorsal nTPM: 20.0
2850
Male, age 76, both hemispheres
33.8
2464
Female, age 72, unknown
21.2
1831
Male, age 72, unknown
16.1
1840
Male, age 53, unknown
8.8
Periaquaductal grey, lateral nTPM: 18.6
2140
Male, age 76, both hemispheres
24.8
2272
Male, age 74, both hemispheres
23.4
2053
Male, age 18, unknown
7.6
Pretectal area nTPM: 16.5
1817
Female, age 42, unknown
23.5
1815
Male, age 53, unknown
23.0
2273
Male, age 74, both hemispheres
21.8
2224
Female, age 72, unknown
19.2
2007
Male, age 72, unknown
19.1
2667
Female, age 75, unknown
18.7
2316
Male, age 76, right hemisphere
17.2
2825
Male, age 18, unknown
12.1
1944
Female, age 72, unknown
11.7
1816
Male, age 51, unknown
9.7
2407
Male, age 75, both hemispheres
5.2
Red nucleus nTPM: 25.3
1954
Female, age 42, unknown
37.6
1865
Male, age 51, unknown
33.7
1904
Male, age 53, unknown
33.6
1821
Female, age 72, unknown
33.4
2503
Female, age 72, unknown
27.0
2785
Male, age 18, unknown
26.6
2823
Male, age 76, right hemisphere
25.9
2769
Male, age 72, unknown
25.6
2227
Male, age 72, unknown
25.0
2588
Male, age 74, left hemisphere
16.5
2725
Female, age 75, unknown
13.3
2584
Male, age 75, left hemisphere
5.3
Substantia nigra nTPM: 18.1
2665
Male, age 74, both hemispheres
24.4
2409
Female, age 72, unknown
21.4
2699
Male, age 18, unknown
20.5
2241
Male, age 72, unknown
19.8
1916
Female, age 42, unknown
19.0
1941
Male, age 53, unknown
18.6
1851
Male, age 51, unknown
17.9
2590
Female, age 75, unknown
17.1
1889
Female, age 72, unknown
15.1
2583
Male, age 75, right hemisphere
7.4
Superior colliculus nTPM: 16.8
1995
Male, age 72, unknown
26.3
2587
Male, age 74, left hemisphere
21.2
1913
Female, age 42, unknown
20.4
2087
Female, age 72, unknown
19.7
1895
Male, age 76, right hemisphere
18.2
2668
Female, age 75, unknown
18.1
1839
Male, age 51, unknown
15.2
2261
Male, age 18, unknown
15.1
1796
Male, age 53, unknown
11.2
2664
Male, age 75, both hemispheres
2.6
Ventral tegmental area nTPM: 17.5
2410
Female, age 72, unknown
23.8
1915
Female, age 42, unknown
17.5
2218
Male, age 76, both hemispheres
16.9
2223
Female, age 72, unknown
16.2
1942
Male, age 51, unknown
15.7
2021
Male, age 53, unknown
14.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 23.5
Samples: 139
Max nTPM: 99.0
Min nTPM: 6.0
Std nTPM: 18.2
Median nTPM: 17.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
99.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
97.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
92.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
87.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
74.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
68.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
68.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
60.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
55.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
53.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
49.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
48.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
47.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
46.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
45.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
44.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
44.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
42.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
42.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
41.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
37.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
36.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
35.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
35.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
35.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
34.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
33.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
32.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
32.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
31.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
29.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
29.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
28.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
28.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
25.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
25.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
25.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
24.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
24.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
24.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
24.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
23.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
23.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
22.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
22.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
22.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
22.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
22.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
22.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
22.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
22.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
21.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
21.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
20.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
20.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
19.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
19.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
19.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
19.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
19.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
19.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
19.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
19.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
18.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
18.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
17.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
17.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
17.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
17.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
17.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
17.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
16.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
16.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
16.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
16.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
16.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
15.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
15.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
15.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
15.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
15.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
15.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
15.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
14.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
14.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
14.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
14.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
14.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
14.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
14.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
13.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
13.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
13.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
13.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
13.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
13.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
12.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
12.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
12.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
12.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
12.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
12.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
12.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
12.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
12.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
12.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
11.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
11.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
11.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
11.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
11.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
11.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
11.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
10.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
10.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
10.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
10.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
10.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
10.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
10.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
9.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
9.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
9.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
9.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
9.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
8.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
8.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
8.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
8.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
8.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
8.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
8.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
8.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
8.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
7.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
7.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
6.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
6.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
6.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 30.0
Samples: 4
Max nTPM: 32.3
Min nTPM: 28.2
Sample A
Male
29.1
Sample B
Male
32.3
Sample C
Female
28.2
Sample D
Female
30.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.