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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
29.1
nTPM
HPA Brain:
20.1
nTPM
GTEx:
29.1
nTPM
FANTOM5:
59.4
Scaled Tags Per Million
Pig:
22.0
nTPM
Mouse:
21.1
nTPM
Allen mouse:
2.8
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
20.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 15.7
1911
Female, age 85, right hemisphere
20.1
2529
Female, age 94, left hemisphere
17.7
1898
Male, age 80, left hemisphere
17.2
2621
Female, age 67, right hemisphere
16.4
2148
Female, age 91, left hemisphere
13.3
1855
Male, age 76, left hemisphere
9.6
Dentate gyrus nTPM: 17.7
2010
Male, age 76, both hemispheres
28.2
2530
Female, age 94, left hemisphere
21.2
2528
Male, age 74, both hemispheres
17.8
2246
Female, age 85, both hemispheres
14.0
2531
Female, age 67, both hemispheres
13.6
1927
Female, age 91, both hemispheres
11.1
Entorhinal gyrus nTPM: 10.6
2117
Female, age 91, right hemisphere
16.6
1938
Female, age 85, left hemisphere
12.5
2686
Male, age 75, right hemisphere
10.0
1787
Male, age 76, left hemisphere
9.8
2613
Female, age 94, left hemisphere
7.7
2764
Male, age 80, right hemisphere
6.9
Hippocampus, CA1 nTPM: 14.8
2749
Male, age 80, left hemisphere
17.8
2082
Female, age 91, right hemisphere
14.4
2045
Male, age 76, both hemispheres
14.1
2527
Male, age 74, both hemispheres
14.1
1873
Female, age 85, both hemispheres
13.6
Hippocampus, CA2 nTPM: 20.1
1963
Male, age 80, left hemisphere
25.3
2249
Male, age 74, both hemispheres
24.5
2437
Female, age 94, left hemisphere
19.3
2113
Female, age 91, right hemisphere
17.5
1940
Female, age 85, left hemisphere
17.0
1892
Male, age 76, both hemispheres
16.9
Hippocampus, CA3 nTPM: 19.1
1867
Male, age 76, both hemispheres
34.4
2436
Male, age 74, both hemispheres
21.1
1891
Female, age 85, both hemispheres
20.8
2861
Female, age 67, both hemispheres
20.1
2137
Male, age 80, left hemisphere
11.6
2620
Female, age 94, left hemisphere
6.8
Parahippocampal cortex nTPM: 13.0
2018
Male, age 76, both hemispheres
17.0
1933
Female, age 85, both hemispheres
14.6
1850
Male, age 80, both hemispheres
13.7
2692
Male, age 74, both hemispheres
13.6
1990
Female, age 91, right hemisphere
13.2
2245
Female, age 91, both hemispheres
13.1
2693
Female, age 94, both hemispheres
13.0
2622
Female, age 67, right hemisphere
12.5
2250
Female, age 67, right hemisphere
11.5
2532
Female, age 72, left hemisphere
7.5
Perirhinal gyrus nTPM: 10.4
1841
Female, age 85, right hemisphere
16.4
2521
Female, age 94, right hemisphere
10.1
1847
Female, age 91, left hemisphere
9.4
2848
Male, age 76, right hemisphere
9.2
1794
Male, age 80, right hemisphere
7.1
Subiculum nTPM: 16.3
2042
Male, age 76, both hemispheres
18.3
2438
Female, age 94, left hemisphere
18.3
1977
Female, age 85, both hemispheres
17.8
1901
Male, age 80, both hemispheres
15.4
2619
Male, age 74, both hemispheres
14.2
2729
Female, age 91, right hemisphere
13.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
29.1
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 29.1
Samples: 197
Max nTPM: 151.6
Min nTPM: 4.6
Std nTPM: 24.0
Median nTPM: 21.6
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
151.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
135.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
127.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
122.5
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
101.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
94.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
89.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
80.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
80.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
79.7
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
74.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
70.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
67.9
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
67.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
65.4
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
63.8
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
62.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
61.0
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
58.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
57.4
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
54.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
53.1
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
52.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
52.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
52.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
51.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
50.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
48.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
48.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
46.9
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
46.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
46.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
44.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
43.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
43.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
43.1
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
42.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
41.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
41.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
41.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
41.3
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
40.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
40.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
40.8
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
40.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
40.3
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
40.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
39.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
39.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
39.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
39.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
38.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
38.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
36.2
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
33.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
33.8
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
33.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
33.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
33.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
32.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
32.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
31.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
31.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
31.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
30.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
30.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
30.2
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
29.9
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
29.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
29.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
29.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
28.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
28.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
27.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
26.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
26.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
26.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
26.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
26.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
26.3
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
26.1
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
25.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
25.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
24.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
24.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
24.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
24.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
23.8
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
23.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
23.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
23.1
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
22.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
22.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
22.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
22.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
22.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
22.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
21.6
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
21.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
21.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
21.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
21.0
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
21.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
20.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
19.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
19.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
19.4
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
19.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
18.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
18.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
18.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
18.6
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
18.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
18.0
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
18.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
18.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
17.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
17.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
17.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
17.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
17.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
16.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
16.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
16.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
16.5
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
16.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
15.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
15.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
15.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
15.8
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
15.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
15.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
15.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
15.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
15.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
15.2
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
14.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
14.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
14.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
14.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
14.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
14.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
14.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
13.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
13.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
13.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
13.0
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
13.0
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
12.9
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
12.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
12.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
12.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
12.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
12.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
12.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
11.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
11.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
11.3
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
11.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
11.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
11.1
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
11.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
11.0
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
10.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
10.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
10.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
10.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
10.5
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
10.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
10.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
10.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
10.1
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
10.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
9.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
9.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
9.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
9.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
9.3
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
9.0
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
9.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
8.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
8.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
8.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
8.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
8.4
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
8.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
8.2
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
8.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
7.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
7.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
7.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
7.4
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
7.1
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
7.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
6.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
5.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
4.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 18.9
Samples: 4
Max nTPM: 21.1
Min nTPM: 16.1
Sample A
Male
21.1
Sample B
Male
20.4
Sample C
Female
16.1
Sample D
Female
18.1
Hippocampal formation nTPM: 21.1
Samples: 4
Max nTPM: 23.7
Min nTPM: 18.7
Sample A
Male
22.2
Sample B
Male
23.7
Sample C
Female
18.7
Sample D
Female
19.7
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.