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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.7
Sample id
Sample description
nTPM
Amygdala nTPM: 23.7
2695
Female, age 67, right hemisphere
33.5
2517
Female, age 94, left hemisphere
30.1
2514
Male, age 75, right hemisphere
22.5
2814
Male, age 76, right hemisphere
22.2
1987
Female, age 91, left hemisphere
10.1
Basal amygdala nTPM: 14.8
2827
Female, age 67, right hemisphere
23.1
2609
Male, age 75, right hemisphere
19.1
2110
Male, age 80, left hemisphere
14.4
1955
Male, age 76, both hemispheres
13.0
2243
Female, age 91, right hemisphere
10.0
2685
Female, age 94, left hemisphere
9.4
Central amygdala nTPM: 18.3
2826
Female, age 94, left hemisphere
35.3
1905
Male, age 76, both hemispheres
17.8
2515
Male, age 75, right hemisphere
16.7
2239
Male, age 80, left hemisphere
13.3
2701
Female, age 91, right hemisphere
8.5
Corticomedial amygdala nTPM: 15.6
2428
Male, age 75, right hemisphere
24.5
2429
Female, age 94, left hemisphere
17.7
2829
Male, age 80, left hemisphere
14.6
2535
Female, age 67, right hemisphere
14.3
2240
Male, age 76, both hemispheres
13.4
2242
Female, age 91, right hemisphere
9.3
Lateral amygdala nTPM: 24.7
2830
Female, age 67, right hemisphere
39.9
2534
Female, age 94, left hemisphere
31.2
2516
Male, age 75, right hemisphere
30.8
1883
Male, age 76, both hemispheres
21.5
2256
Male, age 80, left hemisphere
12.6
2255
Female, age 91, right hemisphere
12.0
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.4
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 24.4
Samples: 152
Max nTPM: 259.8
Min nTPM: 4.9
Std nTPM: 27.5
Median nTPM: 15.6
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
259.8
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
129.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
102.4
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
90.3
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
85.7
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
83.6
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
77.3
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
62.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
59.6
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
59.5
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
56.6
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
55.1
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
54.8
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
54.2
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
53.9
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
48.6
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
45.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
43.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
43.1
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
41.0
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
40.6
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
38.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
37.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
36.9
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
36.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
36.1
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
35.7
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
34.6
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
34.1
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
33.8
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
32.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
31.9
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
31.7
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
31.4
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
30.8
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
29.6
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
28.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
27.9
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
27.8
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
27.8
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
27.0
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
26.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
24.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
24.8
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
24.5
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
24.4
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
24.3
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
24.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
24.0
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
23.7
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
22.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
21.6
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
21.5
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
21.3
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
20.3
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
20.1
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
20.1
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
20.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
19.3
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
19.1
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
18.5
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
18.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
18.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
17.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
17.9
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
17.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
17.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
17.6
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
17.4
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
17.3
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
17.1
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
16.9
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
16.4
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
16.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
15.8
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
15.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
15.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
15.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
15.2
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
14.8
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
14.7
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
14.6
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
14.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
14.3
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
14.3
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
14.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
14.1
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
13.9
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
13.7
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
13.6
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
13.4
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
13.4
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
13.3
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
13.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
13.2
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
12.8
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
12.8
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
12.8
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
12.8
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
12.6
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
12.6
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
12.5
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
12.5
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
12.0
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
11.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
11.5
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
11.4
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
11.4
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
11.1
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
11.0
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
10.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
10.7
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
10.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
10.3
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
10.0
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
10.0
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
9.9
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
9.8
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
9.8
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
9.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
9.5
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
9.5
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
9.2
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
9.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
9.1
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
9.1
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
9.0
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
8.9
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
8.8
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
8.8
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
8.6
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
8.6
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
8.5
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
8.3
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
8.3
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
8.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
7.9
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
7.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
7.5
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
7.5
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
7.2
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
7.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
7.2
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
7.2
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
7.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
6.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
6.8
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
6.6
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
6.5
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
6.2
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
5.0
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
4.9
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.4
Mouse sample
Sample description
nTPM
Amygdala nTPM: 14.4
Samples: 4
Max nTPM: 15.1
Min nTPM: 13.2
Sample A
Male
14.3
Sample B
Male
15.0
Sample C
Female
13.2
Sample D
Female
15.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.