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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
22.5
nTPM
HPA Brain:
32.6
nTPM
GTEx:
22.5
nTPM
FANTOM5:
12.3
Scaled Tags Per Million
Pig:
73.0
nTPM
Mouse:
64.7
nTPM
Allen mouse:
9.6
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA054825
Glial cells
Not detected
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
32.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 19.9
2148
Female, age 91, left hemisphere
29.5
1855
Male, age 76, left hemisphere
26.1
1898
Male, age 80, left hemisphere
22.1
2621
Female, age 67, right hemisphere
17.0
2529
Female, age 94, left hemisphere
15.3
1911
Female, age 85, right hemisphere
9.6
Dentate gyrus nTPM: 23.5
2531
Female, age 67, both hemispheres
39.2
2246
Female, age 85, both hemispheres
27.1
2528
Male, age 74, both hemispheres
22.7
1927
Female, age 91, both hemispheres
19.7
2010
Male, age 76, both hemispheres
16.3
2530
Female, age 94, left hemisphere
15.9
Entorhinal gyrus nTPM: 21.5
1787
Male, age 76, left hemisphere
25.1
2613
Female, age 94, left hemisphere
24.4
1938
Female, age 85, left hemisphere
22.3
2686
Male, age 75, right hemisphere
21.7
2764
Male, age 80, right hemisphere
20.7
2117
Female, age 91, right hemisphere
14.8
Hippocampus, CA1 nTPM: 23.0
2045
Male, age 76, both hemispheres
43.1
2082
Female, age 91, right hemisphere
30.2
1873
Female, age 85, both hemispheres
18.6
2527
Male, age 74, both hemispheres
18.0
2749
Male, age 80, left hemisphere
5.3
Hippocampus, CA2 nTPM: 16.4
1940
Female, age 85, left hemisphere
31.6
2437
Female, age 94, left hemisphere
21.1
2113
Female, age 91, right hemisphere
18.8
2249
Male, age 74, both hemispheres
10.4
1892
Male, age 76, both hemispheres
9.5
1963
Male, age 80, left hemisphere
6.8
Hippocampus, CA3 nTPM: 19.4
2620
Female, age 94, left hemisphere
41.1
2861
Female, age 67, both hemispheres
32.5
1891
Female, age 85, both hemispheres
15.0
2436
Male, age 74, both hemispheres
14.5
1867
Male, age 76, both hemispheres
8.1
2137
Male, age 80, left hemisphere
5.3
Parahippocampal cortex nTPM: 22.8
1850
Male, age 80, both hemispheres
29.2
2250
Female, age 67, right hemisphere
28.4
2532
Female, age 72, left hemisphere
25.6
1933
Female, age 85, both hemispheres
25.1
2245
Female, age 91, both hemispheres
23.3
2693
Female, age 94, both hemispheres
22.7
1990
Female, age 91, right hemisphere
20.8
2622
Female, age 67, right hemisphere
20.6
2692
Male, age 74, both hemispheres
18.1
2018
Male, age 76, both hemispheres
13.8
Perirhinal gyrus nTPM: 32.6
1847
Female, age 91, left hemisphere
41.6
1794
Male, age 80, right hemisphere
36.3
2521
Female, age 94, right hemisphere
36.2
1841
Female, age 85, right hemisphere
32.8
2848
Male, age 76, right hemisphere
16.1
Subiculum nTPM: 16.6
2729
Female, age 91, right hemisphere
29.9
1977
Female, age 85, both hemispheres
21.9
2619
Male, age 74, both hemispheres
18.8
2438
Female, age 94, left hemisphere
17.6
1901
Male, age 80, both hemispheres
6.7
2042
Male, age 76, both hemispheres
4.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
22.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 22.5
Samples: 197
Max nTPM: 66.0
Min nTPM: 1.1
Std nTPM: 13.7
Median nTPM: 19.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
66.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
61.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
60.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
60.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
55.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
55.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
54.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
53.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
52.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
51.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
50.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
49.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
48.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
48.4
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
47.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
46.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
46.2
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
45.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
43.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
41.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
41.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
40.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
40.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
39.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
39.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
38.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
38.7
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
37.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
37.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
37.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
36.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
36.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
34.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
34.8
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
34.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
34.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
34.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
34.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
34.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
33.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
33.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
33.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
33.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
32.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
32.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
31.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
31.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
31.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
30.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
30.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
30.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
29.2
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
29.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
29.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
28.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
28.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
27.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
27.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
27.7
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
27.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
27.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
27.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
26.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
26.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
26.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
25.9
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
25.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
24.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
24.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
24.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
23.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
23.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
23.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
23.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
23.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
23.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
22.9
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
22.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
22.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
22.2
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
21.6
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
21.4
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
21.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
21.1
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
20.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
20.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
20.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
20.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
20.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
20.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
20.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
20.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
20.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
20.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
20.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
20.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
19.8
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
19.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
19.6
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
19.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
19.2
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
19.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
19.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
18.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
18.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
18.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
18.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
18.0
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
17.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
17.9
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
17.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
17.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
17.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
17.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
17.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
16.9
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
16.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
16.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
16.5
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
16.3
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
16.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
16.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
15.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
15.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
15.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
15.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
15.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
15.3
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
15.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
15.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
15.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
14.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
14.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
14.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
14.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
14.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
13.6
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
13.6
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
13.5
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
13.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
13.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
13.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
12.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
12.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
12.5
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
12.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
12.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
12.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
12.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
12.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
11.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
11.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
11.6
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
11.4
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
10.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
10.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
10.5
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
10.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
10.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
10.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
9.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
9.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
9.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
9.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
9.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
9.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
9.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
9.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
9.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
8.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
8.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
8.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
8.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
8.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
8.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
7.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
7.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
7.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
7.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
7.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
7.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
7.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
6.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
6.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
6.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
6.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
5.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
5.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
5.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
5.1
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
4.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
4.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
4.0
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
3.8
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
3.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
2.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
1.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
64.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 64.7
Samples: 4
Max nTPM: 77.4
Min nTPM: 46.5
Sample A
Male
60.3
Sample B
Male
74.6
Sample C
Female
46.5
Sample D
Female
77.4
Hippocampal formation nTPM: 23.4
Samples: 4
Max nTPM: 33.3
Min nTPM: 16.3
Sample A
Male
33.3
Sample B
Male
19.2
Sample C
Female
16.3
Sample D
Female
24.7
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.