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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
454.6
nTPM
HPA Brain:
717.7
nTPM
GTEx:
454.6
nTPM
FANTOM5:
178.4
Scaled Tags Per Million
Pig:
830.0
nTPM
Mouse:
233.3
nTPM
Allen mouse:
21.5
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
717.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 365.7
2411
Female, age 72, unknown
605.1
2219
Male, age 76, both hemispheres
490.2
2666
Male, age 74, left hemisphere
473.0
1827
Male, age 72, unknown
433.5
2828
Female, age 72, unknown
355.3
2019
Male, age 18, unknown
337.9
1870
Female, age 42, unknown
309.6
1833
Male, age 53, unknown
290.7
1830
Male, age 51, unknown
254.2
2586
Male, age 75, left hemisphere
107.1
Dorsal raphe nucleus nTPM: 565.3
2298
Female, age 72, unknown
872.6
2750
Male, age 76, both hemispheres
612.0
2047
Male, age 72, unknown
607.4
1828
Male, age 53, unknown
470.9
2016
Female, age 72, unknown
263.7
Inferior colliculus nTPM: 266.0
2097
Female, age 72, unknown
354.3
1848
Female, age 42, unknown
266.5
1890
Male, age 53, unknown
243.3
2849
Male, age 72, unknown
200.0
Median raphe nucleus nTPM: 717.7
2220
Male, age 76, midline
717.7
Periaquaductal grey, anterior nTPM: 349.0
1795
Male, age 51, unknown
488.8
1947
Male, age 18, unknown
409.7
2502
Female, age 75, unknown
148.6
Periaquaductal grey, dorsal nTPM: 289.1
1840
Male, age 53, unknown
304.6
2850
Male, age 76, both hemispheres
292.2
2464
Female, age 72, unknown
290.6
1831
Male, age 72, unknown
269.0
Periaquaductal grey, lateral nTPM: 345.1
2272
Male, age 74, both hemispheres
523.6
2053
Male, age 18, unknown
264.1
2140
Male, age 76, both hemispheres
247.5
Pretectal area nTPM: 434.5
1944
Female, age 72, unknown
580.9
2224
Female, age 72, unknown
576.3
2007
Male, age 72, unknown
535.6
1816
Male, age 51, unknown
534.7
1817
Female, age 42, unknown
481.4
2273
Male, age 74, both hemispheres
470.0
2667
Female, age 75, unknown
452.0
1815
Male, age 53, unknown
393.3
2825
Male, age 18, unknown
299.5
2407
Male, age 75, both hemispheres
248.3
2316
Male, age 76, right hemisphere
207.9
Red nucleus nTPM: 279.2
2584
Male, age 75, left hemisphere
407.3
1821
Female, age 72, unknown
347.2
1954
Female, age 42, unknown
313.6
2785
Male, age 18, unknown
310.4
2823
Male, age 76, right hemisphere
279.5
2503
Female, age 72, unknown
272.5
1904
Male, age 53, unknown
268.3
2227
Male, age 72, unknown
260.0
2769
Male, age 72, unknown
257.7
2588
Male, age 74, left hemisphere
242.7
1865
Male, age 51, unknown
229.4
2725
Female, age 75, unknown
162.2
Substantia nigra nTPM: 574.5
1916
Female, age 42, unknown
1060.6
2241
Male, age 72, unknown
718.2
1851
Male, age 51, unknown
672.8
1941
Male, age 53, unknown
666.5
2409
Female, age 72, unknown
623.8
1889
Female, age 72, unknown
508.2
2699
Male, age 18, unknown
437.4
2590
Female, age 75, unknown
412.0
2665
Male, age 74, both hemispheres
348.1
2583
Male, age 75, right hemisphere
297.2
Superior colliculus nTPM: 375.9
2668
Female, age 75, unknown
1210.8
2087
Female, age 72, unknown
496.2
1796
Male, age 53, unknown
425.4
2261
Male, age 18, unknown
399.6
1895
Male, age 76, right hemisphere
301.0
1839
Male, age 51, unknown
238.6
1913
Female, age 42, unknown
224.5
2587
Male, age 74, left hemisphere
222.8
1995
Male, age 72, unknown
174.1
2664
Male, age 75, both hemispheres
65.9
Ventral tegmental area nTPM: 590.2
2410
Female, age 72, unknown
830.7
2218
Male, age 76, both hemispheres
824.4
1915
Female, age 42, unknown
677.0
2021
Male, age 53, unknown
429.0
1942
Male, age 51, unknown
416.7
2223
Female, age 72, unknown
363.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
454.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 454.6
Samples: 139
Max nTPM: 2780.4
Min nTPM: 39.0
Std nTPM: 489.1
Median nTPM: 246.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
2780.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
2355.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
2208.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1757.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
1594.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
1544.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1543.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
1406.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1398.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1295.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1239.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
1223.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
1223.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1198.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1037.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1017.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
989.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
950.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
943.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
923.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
912.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
891.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
889.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
820.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
817.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
801.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
719.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
719.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
715.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
705.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
701.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
698.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
613.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
612.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
606.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
590.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
568.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
563.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
556.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
548.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
535.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
519.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
511.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
498.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
497.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
479.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
476.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
475.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
472.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
465.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
451.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
395.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
395.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
381.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
359.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
338.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
327.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
311.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
309.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
308.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
296.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
286.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
286.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
281.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
278.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
269.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
267.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
261.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
253.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
246.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
246.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
245.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
245.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
245.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
245.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
238.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
214.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
209.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
206.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
206.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
200.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
194.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
193.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
191.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
189.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
187.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
185.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
180.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
177.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
176.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
170.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
170.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
166.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
164.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
163.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
158.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
157.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
153.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
153.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
150.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
148.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
145.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
139.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
137.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
121.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
120.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
118.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
115.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
113.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
109.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
109.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
102.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
101.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
99.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
98.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
98.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
96.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
95.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
84.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
83.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
83.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
80.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
77.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
74.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
72.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
72.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
70.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
67.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
67.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
65.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
65.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
63.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
62.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
61.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
60.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
59.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
51.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
51.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
39.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
233.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 233.3
Samples: 4
Max nTPM: 302.1
Min nTPM: 161.6
Sample A
Male
302.1
Sample B
Male
209.4
Sample C
Female
161.6
Sample D
Female
260.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.