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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
414.8
nTPM
HPA Brain:
749.5
nTPM
GTEx:
414.8
nTPM
FANTOM5:
845.6
Scaled Tags Per Million
Pig:
708.5
nTPM
Mouse:
482.8
nTPM
Allen mouse:
23.6
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
749.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 491.2
1898
Male, age 80, left hemisphere
749.7
2621
Female, age 67, right hemisphere
683.6
2148
Female, age 91, left hemisphere
473.2
1855
Male, age 76, left hemisphere
413.1
1911
Female, age 85, right hemisphere
394.9
2529
Female, age 94, left hemisphere
232.8
Dentate gyrus nTPM: 554.4
1927
Female, age 91, both hemispheres
898.9
2010
Male, age 76, both hemispheres
586.0
2528
Male, age 74, both hemispheres
557.5
2530
Female, age 94, left hemisphere
471.8
2246
Female, age 85, both hemispheres
449.9
2531
Female, age 67, both hemispheres
362.3
Entorhinal gyrus nTPM: 489.2
2764
Male, age 80, right hemisphere
723.3
2613
Female, age 94, left hemisphere
705.7
1938
Female, age 85, left hemisphere
550.4
1787
Male, age 76, left hemisphere
441.4
2117
Female, age 91, right hemisphere
292.7
2686
Male, age 75, right hemisphere
221.5
Hippocampus, CA1 nTPM: 725.5
2749
Male, age 80, left hemisphere
1355.8
2527
Male, age 74, both hemispheres
645.2
2082
Female, age 91, right hemisphere
615.0
1873
Female, age 85, both hemispheres
541.3
2045
Male, age 76, both hemispheres
470.5
Hippocampus, CA2 nTPM: 574.9
1963
Male, age 80, left hemisphere
814.2
2249
Male, age 74, both hemispheres
710.4
1892
Male, age 76, both hemispheres
658.6
2113
Female, age 91, right hemisphere
459.0
1940
Female, age 85, left hemisphere
433.1
2437
Female, age 94, left hemisphere
373.8
Hippocampus, CA3 nTPM: 518.4
2137
Male, age 80, left hemisphere
771.2
2436
Male, age 74, both hemispheres
707.7
1867
Male, age 76, both hemispheres
471.3
2620
Female, age 94, left hemisphere
435.0
2861
Female, age 67, both hemispheres
394.8
1891
Female, age 85, both hemispheres
330.5
Parahippocampal cortex nTPM: 517.2
2245
Female, age 91, both hemispheres
636.4
1990
Female, age 91, right hemisphere
633.3
1850
Male, age 80, both hemispheres
630.6
2250
Female, age 67, right hemisphere
622.7
1933
Female, age 85, both hemispheres
622.0
2622
Female, age 67, right hemisphere
481.5
2693
Female, age 94, both hemispheres
476.1
2532
Female, age 72, left hemisphere
452.6
2018
Male, age 76, both hemispheres
406.7
2692
Male, age 74, both hemispheres
210.7
Perirhinal gyrus nTPM: 749.5
1847
Female, age 91, left hemisphere
1144.1
2521
Female, age 94, right hemisphere
825.6
1794
Male, age 80, right hemisphere
735.8
1841
Female, age 85, right hemisphere
589.0
2848
Male, age 76, right hemisphere
453.0
Subiculum nTPM: 345.7
1977
Female, age 85, both hemispheres
511.7
1901
Male, age 80, both hemispheres
464.3
2729
Female, age 91, right hemisphere
306.8
2619
Male, age 74, both hemispheres
290.7
2042
Male, age 76, both hemispheres
275.7
2438
Female, age 94, left hemisphere
225.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
414.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 414.8
Samples: 197
Max nTPM: 1722.6
Min nTPM: 41.0
Std nTPM: 336.5
Median nTPM: 321.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
1722.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
1358.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
1325.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
1324.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
1288.9
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
1248.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
1237.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
1153.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
1151.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
1149.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
1135.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
1087.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
1051.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
1036.7
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
979.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
969.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
951.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
911.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
910.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
908.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
902.7
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
895.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
894.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
876.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
869.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
853.7
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
840.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
813.5
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
788.4
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
751.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
750.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
746.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
745.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
734.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
734.6
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
731.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
726.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
722.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
700.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
693.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
692.7
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
691.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
687.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
660.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
648.0
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
638.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
630.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
624.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
618.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
617.1
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
604.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
579.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
565.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
563.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
561.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
560.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
557.5
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
546.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
540.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
513.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
512.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
504.0
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
501.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
496.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
494.3
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
475.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
466.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
465.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
458.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
446.3
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
438.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
433.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
430.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
428.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
426.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
415.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
415.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
405.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
399.8
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
384.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
375.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
375.1
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
372.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
372.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
370.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
369.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
363.9
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
362.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
361.9
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
347.4
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
345.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
343.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
339.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
337.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
331.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
329.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
328.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
322.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
321.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
316.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
314.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
313.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
300.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
289.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
278.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
277.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
277.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
276.8
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
263.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
262.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
259.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
259.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
256.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
252.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
249.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
249.2
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
246.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
235.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
234.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
231.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
223.4
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
218.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
214.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
213.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
201.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
201.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
199.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
195.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
185.4
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
183.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
174.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
167.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
167.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
165.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
163.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
156.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
152.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
152.3
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
150.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
150.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
149.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
148.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
145.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
143.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
142.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
138.9
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
138.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
136.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
136.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
135.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
132.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
128.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
126.8
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
126.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
125.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
125.3
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
124.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
118.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
118.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
116.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
116.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
116.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
114.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
114.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
113.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
112.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
110.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
108.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
105.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
103.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
101.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
98.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
98.1
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
96.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
93.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
92.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
91.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
90.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
90.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
87.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
85.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
85.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
85.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
84.7
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
83.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
82.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
82.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
82.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
78.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
77.6
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
73.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
73.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
72.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
66.1
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
65.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
58.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
41.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
482.8
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 482.9
Samples: 4
Max nTPM: 579.2
Min nTPM: 408.6
Sample A
Male
421.1
Sample B
Male
579.2
Sample C
Female
408.6
Sample D
Female
522.5
Hippocampal formation nTPM: 442.4
Samples: 4
Max nTPM: 499.8
Min nTPM: 394.7
Sample A
Male
401.4
Sample B
Male
473.6
Sample C
Female
394.7
Sample D
Female
499.8
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.