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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
805.1
nTPM
HPA Brain:
1545.7
nTPM
GTEx:
805.1
nTPM
FANTOM5:
1071.5
Scaled Tags Per Million
Pig:
1840.3
nTPM
Mouse:
643.7
nTPM
Allen mouse:
32.2
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA038171
Antibody CAB006908
Glial cells
Medium
Not detected
Neuronal cells
High
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1545.7
Sample id
Sample description
nTPM
Hippocampus nTPM: 727.6
1898
Male, age 80, left hemisphere
981.9
2621
Female, age 67, right hemisphere
860.6
2148
Female, age 91, left hemisphere
823.5
1855
Male, age 76, left hemisphere
772.8
1911
Female, age 85, right hemisphere
480.6
2529
Female, age 94, left hemisphere
446.0
Dentate gyrus nTPM: 673.9
2531
Female, age 67, both hemispheres
915.1
1927
Female, age 91, both hemispheres
858.3
2246
Female, age 85, both hemispheres
706.9
2528
Male, age 74, both hemispheres
587.3
2530
Female, age 94, left hemisphere
536.5
2010
Male, age 76, both hemispheres
439.2
Entorhinal gyrus nTPM: 1247.6
2613
Female, age 94, left hemisphere
1939.1
2764
Male, age 80, right hemisphere
1464.1
1938
Female, age 85, left hemisphere
1332.0
2686
Male, age 75, right hemisphere
1262.8
1787
Male, age 76, left hemisphere
1029.1
2117
Female, age 91, right hemisphere
458.6
Hippocampus, CA1 nTPM: 799.3
2749
Male, age 80, left hemisphere
1247.5
2045
Male, age 76, both hemispheres
933.3
2527
Male, age 74, both hemispheres
723.7
2082
Female, age 91, right hemisphere
553.0
1873
Female, age 85, both hemispheres
538.9
Hippocampus, CA2 nTPM: 781.1
1940
Female, age 85, left hemisphere
1101.1
1892
Male, age 76, both hemispheres
946.2
2437
Female, age 94, left hemisphere
895.6
2113
Female, age 91, right hemisphere
670.3
2249
Male, age 74, both hemispheres
589.1
1963
Male, age 80, left hemisphere
484.5
Hippocampus, CA3 nTPM: 909.5
2620
Female, age 94, left hemisphere
1385.4
2861
Female, age 67, both hemispheres
1123.3
2137
Male, age 80, left hemisphere
1022.2
1867
Male, age 76, both hemispheres
755.4
2436
Male, age 74, both hemispheres
614.1
1891
Female, age 85, both hemispheres
556.8
Parahippocampal cortex nTPM: 1253.0
2622
Female, age 67, right hemisphere
1774.5
1850
Male, age 80, both hemispheres
1733.5
2532
Female, age 72, left hemisphere
1647.5
2693
Female, age 94, both hemispheres
1379.2
1933
Female, age 85, both hemispheres
1281.2
2245
Female, age 91, both hemispheres
1258.9
2692
Male, age 74, both hemispheres
945.1
2250
Female, age 67, right hemisphere
889.1
1990
Female, age 91, right hemisphere
833.8
2018
Male, age 76, both hemispheres
787.5
Perirhinal gyrus nTPM: 1545.7
1794
Male, age 80, right hemisphere
2009.1
1841
Female, age 85, right hemisphere
1797.5
2848
Male, age 76, right hemisphere
1658.2
1847
Female, age 91, left hemisphere
1328.4
2521
Female, age 94, right hemisphere
935.3
Subiculum nTPM: 694.4
2438
Female, age 94, left hemisphere
893.6
1901
Male, age 80, both hemispheres
838.2
2619
Male, age 74, both hemispheres
736.9
2042
Male, age 76, both hemispheres
639.1
1977
Female, age 85, both hemispheres
627.1
2729
Female, age 91, right hemisphere
431.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
805.1
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 805.1
Samples: 197
Max nTPM: 3330.2
Min nTPM: 45.8
Std nTPM: 589.4
Median nTPM: 675.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
3330.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
2626.1
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
2591.5
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
2532.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
2408.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
2380.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
2091.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
2079.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
2035.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
1988.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
1964.8
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
1961.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
1875.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
1844.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
1821.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
1815.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
1756.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
1681.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
1681.0
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
1540.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
1495.0
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
1490.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
1458.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
1426.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
1419.5
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
1409.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
1403.7
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
1398.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
1362.5
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
1344.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
1343.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
1340.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
1335.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
1322.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
1310.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
1305.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
1276.9
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
1256.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
1217.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
1191.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
1185.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
1177.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
1151.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
1149.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
1146.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
1128.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
1108.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
1105.5
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
1103.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
1103.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
1096.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
1092.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
1072.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
1070.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
1037.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
1035.0
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
1031.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
1027.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
1019.7
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
1014.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
1011.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
996.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
979.4
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
963.1
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
956.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
955.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
940.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
911.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
897.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
892.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
888.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
885.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
883.9
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
882.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
880.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
876.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
874.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
871.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
863.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
851.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
850.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
832.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
830.0
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
822.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
787.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
783.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
780.6
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
774.1
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
769.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
760.0
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
759.3
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
745.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
739.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
737.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
712.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
696.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
683.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
682.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
675.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
675.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
665.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
662.7
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
657.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
640.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
629.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
625.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
625.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
611.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
611.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
609.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
601.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
599.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
597.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
584.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
571.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
563.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
560.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
548.8
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
537.8
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
530.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
522.5
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
517.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
515.9
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
502.2
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
501.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
500.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
499.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
496.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
493.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
491.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
490.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
485.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
481.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
475.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
470.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
464.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
461.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
449.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
433.9
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
428.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
419.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
398.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
397.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
393.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
390.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
382.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
379.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
374.4
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
371.1
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
361.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
361.2
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
340.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
319.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
315.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
315.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
313.4
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
310.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
300.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
298.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
268.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
259.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
251.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
251.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
242.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
235.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
216.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
207.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
205.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
201.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
200.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
189.3
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
188.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
187.0
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
179.1
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
172.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
169.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
168.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
139.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
133.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
132.7
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
132.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
128.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
120.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
114.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
112.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
112.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
97.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
97.1
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
96.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
95.1
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
88.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
84.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
78.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
73.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
71.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
71.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
45.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
643.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 587.0
Samples: 4
Max nTPM: 769.6
Min nTPM: 447.7
Sample A
Male
665.2
Sample B
Male
769.6
Sample C
Female
465.3
Sample D
Female
447.7
Hippocampal formation nTPM: 643.7
Samples: 4
Max nTPM: 712.9
Min nTPM: 547.1
Sample A
Male
547.1
Sample B
Male
712.9
Sample C
Female
693.8
Sample D
Female
620.9
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.