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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
87.7
nTPM
HPA Brain:
138.8
nTPM
GTEx:
87.7
nTPM
FANTOM5:
22.4
Scaled Tags Per Million
Pig:
658.6
nTPM
Mouse:
453.1
nTPM
Allen mouse:
21.9
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
138.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 95.1
2219
Male, age 76, both hemispheres
149.5
2666
Male, age 74, left hemisphere
137.6
1870
Female, age 42, unknown
93.1
1827
Male, age 72, unknown
92.3
2828
Female, age 72, unknown
91.1
2019
Male, age 18, unknown
90.7
2586
Male, age 75, left hemisphere
83.3
1833
Male, age 53, unknown
75.0
2411
Female, age 72, unknown
72.4
1830
Male, age 51, unknown
65.9
Dorsal raphe nucleus nTPM: 81.8
2047
Male, age 72, unknown
95.0
1828
Male, age 53, unknown
92.2
2750
Male, age 76, both hemispheres
88.9
2298
Female, age 72, unknown
88.2
2016
Female, age 72, unknown
44.5
Inferior colliculus nTPM: 97.7
1848
Female, age 42, unknown
109.4
2849
Male, age 72, unknown
102.7
1890
Male, age 53, unknown
89.8
2097
Female, age 72, unknown
88.8
Median raphe nucleus nTPM: 138.8
2220
Male, age 76, midline
138.8
Periaquaductal grey, anterior nTPM: 137.2
2502
Female, age 75, unknown
144.0
1947
Male, age 18, unknown
139.4
1795
Male, age 51, unknown
128.3
Periaquaductal grey, dorsal nTPM: 86.5
2850
Male, age 76, both hemispheres
101.6
1831
Male, age 72, unknown
96.9
1840
Male, age 53, unknown
86.9
2464
Female, age 72, unknown
60.7
Periaquaductal grey, lateral nTPM: 73.8
2140
Male, age 76, both hemispheres
78.2
2272
Male, age 74, both hemispheres
71.6
2053
Male, age 18, unknown
71.5
Pretectal area nTPM: 123.7
2667
Female, age 75, unknown
202.2
1817
Female, age 42, unknown
179.0
1944
Female, age 72, unknown
178.8
1816
Male, age 51, unknown
169.4
2007
Male, age 72, unknown
155.9
1815
Male, age 53, unknown
117.9
2224
Female, age 72, unknown
88.4
2825
Male, age 18, unknown
77.0
2407
Male, age 75, both hemispheres
72.3
2316
Male, age 76, right hemisphere
61.2
2273
Male, age 74, both hemispheres
58.8
Red nucleus nTPM: 66.2
2785
Male, age 18, unknown
105.6
1865
Male, age 51, unknown
72.6
1821
Female, age 72, unknown
70.2
2588
Male, age 74, left hemisphere
70.2
2584
Male, age 75, left hemisphere
69.6
2227
Male, age 72, unknown
64.6
2769
Male, age 72, unknown
63.3
1954
Female, age 42, unknown
61.3
2823
Male, age 76, right hemisphere
56.2
1904
Male, age 53, unknown
55.4
2725
Female, age 75, unknown
52.8
2503
Female, age 72, unknown
52.3
Substantia nigra nTPM: 119.7
2665
Male, age 74, both hemispheres
202.6
1889
Female, age 72, unknown
173.1
1941
Male, age 53, unknown
159.8
1916
Female, age 42, unknown
159.3
1851
Male, age 51, unknown
123.0
2241
Male, age 72, unknown
95.0
2699
Male, age 18, unknown
92.7
2409
Female, age 72, unknown
88.6
2590
Female, age 75, unknown
55.1
2583
Male, age 75, right hemisphere
47.6
Superior colliculus nTPM: 95.0
1895
Male, age 76, right hemisphere
133.3
2087
Female, age 72, unknown
119.8
1796
Male, age 53, unknown
117.6
2668
Female, age 75, unknown
117.0
2261
Male, age 18, unknown
99.2
2664
Male, age 75, both hemispheres
82.0
1839
Male, age 51, unknown
77.6
2587
Male, age 74, left hemisphere
75.1
1913
Female, age 42, unknown
74.8
1995
Male, age 72, unknown
53.5
Ventral tegmental area nTPM: 108.8
2218
Male, age 76, both hemispheres
188.0
2410
Female, age 72, unknown
109.6
1915
Female, age 42, unknown
103.5
1942
Male, age 51, unknown
95.4
2223
Female, age 72, unknown
88.3
2021
Male, age 53, unknown
67.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
87.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 87.7
Samples: 139
Max nTPM: 392.6
Min nTPM: 6.2
Std nTPM: 69.2
Median nTPM: 72.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
392.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
366.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
271.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
236.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
227.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
215.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
214.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
186.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
186.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
183.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
177.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
173.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
172.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
170.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
168.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
166.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
166.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
166.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
165.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
165.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
165.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
164.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
164.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
160.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
158.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
153.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
150.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
146.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
139.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
139.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
132.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
132.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
132.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
126.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
125.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
124.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
123.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
122.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
121.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
120.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
120.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
119.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
118.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
116.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
112.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
111.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
109.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
106.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
105.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
105.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
104.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
104.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
100.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
95.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
94.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
93.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
90.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
90.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
89.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
89.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
88.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
86.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
85.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
84.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
83.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
81.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
78.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
73.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
72.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
72.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
71.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
68.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
67.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
67.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
64.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
63.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
62.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
62.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
62.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
60.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
54.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
54.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
53.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
52.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
50.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
49.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
48.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
48.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
47.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
46.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
43.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
42.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
42.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
42.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
42.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
39.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
39.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
37.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
36.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
35.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
34.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
33.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
33.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
32.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
31.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
31.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
31.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
29.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
28.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
27.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
26.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
26.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
25.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
22.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
22.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
22.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
21.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
20.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
19.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
18.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
17.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
16.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
16.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
16.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
15.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
15.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
14.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
13.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
13.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
13.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
12.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
12.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
11.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
11.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
9.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
8.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
7.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
6.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
6.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
453.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 453.1
Samples: 4
Max nTPM: 468.3
Min nTPM: 437.5
Sample A
Male
437.5
Sample B
Male
443.7
Sample C
Female
468.3
Sample D
Female
463.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.