We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
19.2
nTPM
HPA Brain:
13.9
nTPM
GTEx:
19.2
nTPM
FANTOM5:
16.6
Scaled Tags Per Million
Pig:
53.2
nTPM
Mouse:
4.4
nTPM
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 11.2
2586
Male, age 75, left hemisphere
21.6
2828
Female, age 72, unknown
19.3
1833
Male, age 53, unknown
10.5
2666
Male, age 74, left hemisphere
9.7
2411
Female, age 72, unknown
9.5
1870
Female, age 42, unknown
9.4
1827
Male, age 72, unknown
9.3
1830
Male, age 51, unknown
7.6
2019
Male, age 18, unknown
7.6
2219
Male, age 76, both hemispheres
7.4
Dorsal raphe nucleus nTPM: 13.6
2047
Male, age 72, unknown
16.3
2016
Female, age 72, unknown
15.5
2298
Female, age 72, unknown
14.6
2750
Male, age 76, both hemispheres
11.3
1828
Male, age 53, unknown
10.5
Inferior colliculus nTPM: 10.3
1848
Female, age 42, unknown
12.0
2097
Female, age 72, unknown
10.1
1890
Male, age 53, unknown
9.7
2849
Male, age 72, unknown
9.5
Median raphe nucleus nTPM: 12.2
2220
Male, age 76, midline
12.2
Periaquaductal grey, anterior nTPM: 12.0
1795
Male, age 51, unknown
14.4
1947
Male, age 18, unknown
10.8
2502
Female, age 75, unknown
10.7
Periaquaductal grey, dorsal nTPM: 12.6
1840
Male, age 53, unknown
15.1
1831
Male, age 72, unknown
14.3
2850
Male, age 76, both hemispheres
10.9
2464
Female, age 72, unknown
9.9
Periaquaductal grey, lateral nTPM: 12.4
2053
Male, age 18, unknown
17.7
2140
Male, age 76, both hemispheres
11.1
2272
Male, age 74, both hemispheres
8.5
Pretectal area nTPM: 12.8
2667
Female, age 75, unknown
15.2
1944
Female, age 72, unknown
14.3
2825
Male, age 18, unknown
14.2
1816
Male, age 51, unknown
13.8
2273
Male, age 74, both hemispheres
13.8
1815
Male, age 53, unknown
13.6
2316
Male, age 76, right hemisphere
13.1
1817
Female, age 42, unknown
12.6
2407
Male, age 75, both hemispheres
12.1
2224
Female, age 72, unknown
9.1
2007
Male, age 72, unknown
8.7
Red nucleus nTPM: 13.3
2823
Male, age 76, right hemisphere
16.6
1821
Female, age 72, unknown
16.3
2725
Female, age 75, unknown
15.5
2503
Female, age 72, unknown
14.8
1954
Female, age 42, unknown
14.0
2227
Male, age 72, unknown
13.7
2769
Male, age 72, unknown
13.5
1904
Male, age 53, unknown
12.2
1865
Male, age 51, unknown
12.0
2584
Male, age 75, left hemisphere
11.4
2588
Male, age 74, left hemisphere
11.0
2785
Male, age 18, unknown
8.6
Substantia nigra nTPM: 13.5
2699
Male, age 18, unknown
18.3
1916
Female, age 42, unknown
17.3
1851
Male, age 51, unknown
15.1
2583
Male, age 75, right hemisphere
14.4
2590
Female, age 75, unknown
12.9
2665
Male, age 74, both hemispheres
12.2
1941
Male, age 53, unknown
11.9
1889
Female, age 72, unknown
11.5
2409
Female, age 72, unknown
10.8
2241
Male, age 72, unknown
10.4
Superior colliculus nTPM: 13.1
1995
Male, age 72, unknown
18.9
1796
Male, age 53, unknown
16.0
2664
Male, age 75, both hemispheres
15.8
1913
Female, age 42, unknown
14.3
2087
Female, age 72, unknown
13.7
2261
Male, age 18, unknown
12.4
1839
Male, age 51, unknown
10.9
2668
Female, age 75, unknown
10.2
2587
Male, age 74, left hemisphere
9.4
1895
Male, age 76, right hemisphere
9.3
Ventral tegmental area nTPM: 13.9
1915
Female, age 42, unknown
18.3
1942
Male, age 51, unknown
15.6
2410
Female, age 72, unknown
13.4
2021
Male, age 53, unknown
13.2
2218
Male, age 76, both hemispheres
11.5
2223
Female, age 72, unknown
11.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
19.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 19.2
Samples: 139
Max nTPM: 157.3
Min nTPM: 1.5
Std nTPM: 18.2
Median nTPM: 15.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
157.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
80.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
74.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
70.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
63.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
60.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
54.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
52.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
49.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
40.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
40.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
38.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
37.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
36.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
34.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
34.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
33.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
28.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
28.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
27.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
27.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
26.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
26.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
24.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
24.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
23.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
23.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
22.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
21.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
21.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
20.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
20.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
20.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
20.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
20.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
19.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
19.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
19.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
19.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
19.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
19.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
19.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
19.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
19.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
18.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
18.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
18.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
18.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
18.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
18.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
17.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
17.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
17.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
17.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
16.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
16.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
16.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
16.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
16.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
16.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
16.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
16.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
16.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
16.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
16.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
16.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
16.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
16.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
15.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
15.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
15.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
15.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
15.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
15.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
15.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
15.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
14.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
14.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
14.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
14.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
14.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
13.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
13.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
13.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
13.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
12.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
12.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
11.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
11.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
11.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
11.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
11.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
11.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
11.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
11.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
10.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
10.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
10.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
10.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
10.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
10.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
10.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
10.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
10.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
9.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
9.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
9.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
9.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
9.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
9.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
8.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
8.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
8.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
8.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
8.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
7.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
7.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
7.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
7.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
7.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
6.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
6.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
6.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
6.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
6.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
6.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
6.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
6.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
5.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
4.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
4.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
4.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
4.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
3.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
3.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
3.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
2.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
2.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
1.5
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.