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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
20.4
nTPM
HPA Brain:
49.4
nTPM
GTEx:
20.4
nTPM
FANTOM5:
101.2
Scaled Tags Per Million
Pig:
27.9
nTPM
Mouse:
13.2
nTPM
Allen mouse:
0.3
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
49.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 39.5
2411
Female, age 72, unknown
58.8
1830
Male, age 51, unknown
47.1
2019
Male, age 18, unknown
44.7
1833
Male, age 53, unknown
42.2
1870
Female, age 42, unknown
40.9
2666
Male, age 74, left hemisphere
38.0
2828
Female, age 72, unknown
36.9
1827
Male, age 72, unknown
34.2
2219
Male, age 76, both hemispheres
29.4
2586
Male, age 75, left hemisphere
23.0
Dorsal raphe nucleus nTPM: 28.1
2750
Male, age 76, both hemispheres
56.1
2016
Female, age 72, unknown
26.9
1828
Male, age 53, unknown
24.7
2298
Female, age 72, unknown
16.9
2047
Male, age 72, unknown
15.7
Inferior colliculus nTPM: 23.9
1890
Male, age 53, unknown
29.4
2097
Female, age 72, unknown
25.5
1848
Female, age 42, unknown
22.5
2849
Male, age 72, unknown
18.3
Median raphe nucleus nTPM: 22.0
2220
Male, age 76, midline
22.0
Periaquaductal grey, anterior nTPM: 22.9
2502
Female, age 75, unknown
28.3
1947
Male, age 18, unknown
21.4
1795
Male, age 51, unknown
19.0
Periaquaductal grey, dorsal nTPM: 19.0
2464
Female, age 72, unknown
28.0
1831
Male, age 72, unknown
24.8
2850
Male, age 76, both hemispheres
13.4
1840
Male, age 53, unknown
9.6
Periaquaductal grey, lateral nTPM: 21.4
2053
Male, age 18, unknown
28.0
2272
Male, age 74, both hemispheres
24.1
2140
Male, age 76, both hemispheres
12.1
Pretectal area nTPM: 28.4
1815
Male, age 53, unknown
51.8
2007
Male, age 72, unknown
42.9
2316
Male, age 76, right hemisphere
31.2
1817
Female, age 42, unknown
31.1
1816
Male, age 51, unknown
26.6
2825
Male, age 18, unknown
24.8
2407
Male, age 75, both hemispheres
24.5
2273
Male, age 74, both hemispheres
24.1
1944
Female, age 72, unknown
22.9
2224
Female, age 72, unknown
17.1
2667
Female, age 75, unknown
15.7
Red nucleus nTPM: 49.4
1821
Female, age 72, unknown
64.4
1865
Male, age 51, unknown
61.8
2823
Male, age 76, right hemisphere
58.9
2503
Female, age 72, unknown
56.0
1904
Male, age 53, unknown
51.7
2588
Male, age 74, left hemisphere
50.6
2785
Male, age 18, unknown
49.4
2769
Male, age 72, unknown
45.6
2227
Male, age 72, unknown
43.1
1954
Female, age 42, unknown
41.9
2725
Female, age 75, unknown
38.7
2584
Male, age 75, left hemisphere
31.0
Substantia nigra nTPM: 30.4
1889
Female, age 72, unknown
42.8
2409
Female, age 72, unknown
42.4
2590
Female, age 75, unknown
35.1
2583
Male, age 75, right hemisphere
33.7
1851
Male, age 51, unknown
32.6
1941
Male, age 53, unknown
27.3
2241
Male, age 72, unknown
25.9
2699
Male, age 18, unknown
22.9
2665
Male, age 74, both hemispheres
22.0
1916
Female, age 42, unknown
19.4
Superior colliculus nTPM: 36.4
1913
Female, age 42, unknown
54.6
2668
Female, age 75, unknown
48.7
1995
Male, age 72, unknown
47.1
2587
Male, age 74, left hemisphere
42.7
1895
Male, age 76, right hemisphere
41.6
1796
Male, age 53, unknown
30.7
2261
Male, age 18, unknown
30.7
1839
Male, age 51, unknown
28.7
2087
Female, age 72, unknown
23.2
2664
Male, age 75, both hemispheres
15.9
Ventral tegmental area nTPM: 35.5
2410
Female, age 72, unknown
53.5
2223
Female, age 72, unknown
51.7
2218
Male, age 76, both hemispheres
30.3
1942
Male, age 51, unknown
27.8
2021
Male, age 53, unknown
25.8
1915
Female, age 42, unknown
24.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
20.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 20.4
Samples: 139
Max nTPM: 53.7
Min nTPM: 3.8
Std nTPM: 10.2
Median nTPM: 18.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
53.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
51.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
49.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
47.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
46.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
43.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
42.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
40.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
38.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
38.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
38.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
36.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
35.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
34.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
33.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
32.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
31.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
30.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
30.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
29.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
29.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
28.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
28.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
28.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
28.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
28.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
28.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
28.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
27.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
27.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
27.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
26.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
26.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
25.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
25.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
25.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
25.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
25.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
24.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
24.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
24.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
24.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
24.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
24.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
24.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
24.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
23.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
23.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
23.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
22.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
22.3
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
22.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
22.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
21.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
21.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
21.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
20.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
20.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
20.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
20.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
20.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
20.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
20.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
19.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
19.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
18.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
18.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
18.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
18.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
18.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
18.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
18.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
18.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
18.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
18.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
17.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
17.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
17.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
17.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
17.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
16.8
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
16.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
16.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
16.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
16.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
16.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
16.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
16.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
15.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
15.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
15.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
14.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
14.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
14.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
14.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
14.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
14.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
14.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
14.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
14.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
14.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
13.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
13.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
13.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
12.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
12.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
12.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
12.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
12.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
11.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
11.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
11.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
11.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
11.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
10.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
10.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
10.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
10.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
9.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
9.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
8.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
8.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
8.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
8.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
8.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
8.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
8.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
8.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
8.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
8.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
7.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
7.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
7.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
6.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
6.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
4.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
4.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
4.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
3.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 13.2
Samples: 4
Max nTPM: 14.6
Min nTPM: 11.9
Sample A
Male
14.6
Sample B
Male
13.3
Sample C
Female
12.9
Sample D
Female
11.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.