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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
80.8
nTPM
HPA Brain:
235.0
nTPM
GTEx:
80.8
nTPM
FANTOM5:
248.1
Scaled Tags Per Million
Pig:
84.3
nTPM
Mouse:
100.5
nTPM
Allen mouse:
12.9
Expression energy
HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA007450
Glial cells
Low
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
235.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 191.5
2621
Female, age 67, right hemisphere
245.5
1855
Male, age 76, left hemisphere
235.7
1898
Male, age 80, left hemisphere
229.8
2148
Female, age 91, left hemisphere
160.3
2529
Female, age 94, left hemisphere
146.2
1911
Female, age 85, right hemisphere
131.7
Dentate gyrus nTPM: 235.0
2530
Female, age 94, left hemisphere
413.8
2010
Male, age 76, both hemispheres
280.1
2531
Female, age 67, both hemispheres
195.7
2528
Male, age 74, both hemispheres
191.7
2246
Female, age 85, both hemispheres
182.5
1927
Female, age 91, both hemispheres
146.1
Entorhinal gyrus nTPM: 142.3
2117
Female, age 91, right hemisphere
193.7
2764
Male, age 80, right hemisphere
181.5
1938
Female, age 85, left hemisphere
136.4
1787
Male, age 76, left hemisphere
121.0
2686
Male, age 75, right hemisphere
114.3
2613
Female, age 94, left hemisphere
107.1
Hippocampus, CA1 nTPM: 198.0
1873
Female, age 85, both hemispheres
334.3
2749
Male, age 80, left hemisphere
198.2
2045
Male, age 76, both hemispheres
183.4
2527
Male, age 74, both hemispheres
172.8
2082
Female, age 91, right hemisphere
101.5
Hippocampus, CA2 nTPM: 179.2
1963
Male, age 80, left hemisphere
287.3
2437
Female, age 94, left hemisphere
209.7
1892
Male, age 76, both hemispheres
180.4
2249
Male, age 74, both hemispheres
159.9
1940
Female, age 85, left hemisphere
133.4
2113
Female, age 91, right hemisphere
104.2
Hippocampus, CA3 nTPM: 144.0
2620
Female, age 94, left hemisphere
238.5
2861
Female, age 67, both hemispheres
183.1
1891
Female, age 85, both hemispheres
160.4
2436
Male, age 74, both hemispheres
127.1
1867
Male, age 76, both hemispheres
104.4
2137
Male, age 80, left hemisphere
50.4
Parahippocampal cortex nTPM: 140.0
2532
Female, age 72, left hemisphere
215.7
1850
Male, age 80, both hemispheres
158.2
1933
Female, age 85, both hemispheres
152.1
2245
Female, age 91, both hemispheres
145.9
1990
Female, age 91, right hemisphere
145.6
2693
Female, age 94, both hemispheres
128.9
2692
Male, age 74, both hemispheres
122.9
2622
Female, age 67, right hemisphere
117.6
2250
Female, age 67, right hemisphere
108.4
2018
Male, age 76, both hemispheres
104.3
Perirhinal gyrus nTPM: 142.0
1841
Female, age 85, right hemisphere
165.8
2521
Female, age 94, right hemisphere
146.5
1794
Male, age 80, right hemisphere
145.2
2848
Male, age 76, right hemisphere
143.1
1847
Female, age 91, left hemisphere
109.4
Subiculum nTPM: 148.2
1901
Male, age 80, both hemispheres
167.1
1977
Female, age 85, both hemispheres
160.5
2042
Male, age 76, both hemispheres
156.3
2729
Female, age 91, right hemisphere
144.9
2619
Male, age 74, both hemispheres
142.1
2438
Female, age 94, left hemisphere
118.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
80.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 80.8
Samples: 197
Max nTPM: 252.7
Min nTPM: 17.8
Std nTPM: 40.9
Median nTPM: 72.1
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
252.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
194.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
187.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
183.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
183.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
177.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
176.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
175.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
171.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
166.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
162.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
161.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
158.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
157.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
156.8
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
156.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
153.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
146.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
143.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
142.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
142.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
140.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
139.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
138.5
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
136.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
136.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
135.9
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
131.9
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
124.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
124.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
123.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
121.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
117.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
115.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
113.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
111.7
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
111.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
106.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
104.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
104.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
104.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
104.0
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
103.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
103.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
102.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
101.8
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
99.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
98.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
97.6
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
97.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
97.2
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
96.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
96.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
95.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
95.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
95.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
94.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
94.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
93.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
93.2
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
93.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
92.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
90.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
90.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
90.0
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
89.7
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
89.6
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
88.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
87.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
87.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
87.1
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
87.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
86.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
85.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
85.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
84.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
84.2
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
84.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
83.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
83.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
83.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
80.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
80.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
80.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
80.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
78.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
78.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
77.4
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
77.3
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
76.8
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
75.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
75.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
74.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
74.0
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
73.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
73.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
72.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
72.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
72.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
69.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
69.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
69.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
68.9
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
68.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
68.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
67.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
66.1
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
65.5
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
65.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
64.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
64.0
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
64.0
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
63.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
63.8
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
63.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
63.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
63.5
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
62.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
62.9
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
62.8
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
61.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
60.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
59.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
59.4
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
58.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
58.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
58.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
57.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
57.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
57.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
57.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
56.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
55.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
55.4
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
55.3
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
54.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
54.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
53.7
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
53.4
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
53.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
52.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
52.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
52.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
51.8
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
51.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
50.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
50.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
49.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
49.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
48.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
48.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
48.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
48.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
47.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
47.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
47.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
46.9
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
46.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
46.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
46.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
46.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
46.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
45.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
45.3
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
45.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
44.2
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
43.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
43.8
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
42.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
42.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
42.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
41.1
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
41.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
40.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
40.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
39.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
39.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
36.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
36.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
36.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
35.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
35.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
34.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
33.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
32.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
32.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
31.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
31.8
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
31.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
31.3
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
30.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
29.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
29.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
28.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
27.3
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
26.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
17.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
100.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 93.3
Samples: 4
Max nTPM: 122.4
Min nTPM: 78.1
Sample A
Male
80.9
Sample B
Male
91.8
Sample C
Female
78.1
Sample D
Female
122.4
Hippocampal formation nTPM: 100.5
Samples: 4
Max nTPM: 128.3
Min nTPM: 80.6
Sample A
Male
80.6
Sample B
Male
106.0
Sample C
Female
128.3
Sample D
Female
87.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.