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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
45.4
nTPM
HPA Brain:
39.3
nTPM
GTEx:
45.4
nTPM
FANTOM5:
16.8
Scaled Tags Per Million
Pig:
21.8
nTPM
Mouse:
13.8
nTPM
Allen mouse:
0.9
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
39.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 35.3
2219
Male, age 76, both hemispheres
88.7
2586
Male, age 75, left hemisphere
43.3
1830
Male, age 51, unknown
35.5
1870
Female, age 42, unknown
34.7
2411
Female, age 72, unknown
32.8
1833
Male, age 53, unknown
31.9
1827
Male, age 72, unknown
27.0
2666
Male, age 74, left hemisphere
21.7
2828
Female, age 72, unknown
21.7
2019
Male, age 18, unknown
16.1
Dorsal raphe nucleus nTPM: 22.6
2047
Male, age 72, unknown
24.6
2016
Female, age 72, unknown
24.2
2750
Male, age 76, both hemispheres
22.9
1828
Male, age 53, unknown
22.7
2298
Female, age 72, unknown
18.5
Inferior colliculus nTPM: 30.7
2849
Male, age 72, unknown
34.1
1848
Female, age 42, unknown
32.5
1890
Male, age 53, unknown
31.1
2097
Female, age 72, unknown
25.3
Median raphe nucleus nTPM: 24.9
2220
Male, age 76, midline
24.9
Periaquaductal grey, anterior nTPM: 24.2
2502
Female, age 75, unknown
29.8
1795
Male, age 51, unknown
22.9
1947
Male, age 18, unknown
19.8
Periaquaductal grey, dorsal nTPM: 23.7
1831
Male, age 72, unknown
27.4
1840
Male, age 53, unknown
25.2
2850
Male, age 76, both hemispheres
21.3
2464
Female, age 72, unknown
21.0
Periaquaductal grey, lateral nTPM: 26.4
2053
Male, age 18, unknown
31.9
2272
Male, age 74, both hemispheres
28.5
2140
Male, age 76, both hemispheres
18.9
Pretectal area nTPM: 24.6
2407
Male, age 75, both hemispheres
43.1
2825
Male, age 18, unknown
37.5
2273
Male, age 74, both hemispheres
31.4
2316
Male, age 76, right hemisphere
24.2
2224
Female, age 72, unknown
23.6
1816
Male, age 51, unknown
22.3
1944
Female, age 72, unknown
21.2
2007
Male, age 72, unknown
20.0
1815
Male, age 53, unknown
18.9
2667
Female, age 75, unknown
17.7
1817
Female, age 42, unknown
10.7
Red nucleus nTPM: 31.6
2584
Male, age 75, left hemisphere
53.8
2725
Female, age 75, unknown
45.4
2769
Male, age 72, unknown
38.8
2227
Male, age 72, unknown
38.3
1954
Female, age 42, unknown
33.4
2588
Male, age 74, left hemisphere
28.3
1865
Male, age 51, unknown
27.6
2503
Female, age 72, unknown
27.5
1821
Female, age 72, unknown
26.0
1904
Male, age 53, unknown
21.7
2823
Male, age 76, right hemisphere
19.6
2785
Male, age 18, unknown
18.6
Substantia nigra nTPM: 39.3
2699
Male, age 18, unknown
62.1
1941
Male, age 53, unknown
57.8
2590
Female, age 75, unknown
46.5
1916
Female, age 42, unknown
45.9
1851
Male, age 51, unknown
39.7
2241
Male, age 72, unknown
36.0
2665
Male, age 74, both hemispheres
27.7
2409
Female, age 72, unknown
27.0
2583
Male, age 75, right hemisphere
25.7
1889
Female, age 72, unknown
24.7
Superior colliculus nTPM: 25.0
1895
Male, age 76, right hemisphere
36.9
2587
Male, age 74, left hemisphere
34.1
1796
Male, age 53, unknown
29.1
1839
Male, age 51, unknown
27.2
2261
Male, age 18, unknown
27.1
2664
Male, age 75, both hemispheres
24.9
2087
Female, age 72, unknown
22.9
1913
Female, age 42, unknown
20.9
1995
Male, age 72, unknown
14.3
2668
Female, age 75, unknown
13.0
Ventral tegmental area nTPM: 38.1
2218
Male, age 76, both hemispheres
44.0
2223
Female, age 72, unknown
41.7
1915
Female, age 42, unknown
40.7
2410
Female, age 72, unknown
38.8
1942
Male, age 51, unknown
32.9
2021
Male, age 53, unknown
30.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
45.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 45.4
Samples: 139
Max nTPM: 107.6
Min nTPM: 11.0
Std nTPM: 19.0
Median nTPM: 45.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
107.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
98.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
98.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
83.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
79.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
78.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
77.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
76.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
76.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
75.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
74.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
74.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
72.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
72.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
71.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
70.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
70.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
69.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
67.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
67.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
65.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
65.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
65.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
65.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
63.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
63.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
63.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
62.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
62.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
61.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
59.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
58.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
58.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
57.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
55.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
55.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
55.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
54.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
54.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
53.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
53.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
52.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
52.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
52.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
51.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
51.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
51.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
51.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
51.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
51.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
50.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
50.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
49.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
49.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
48.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
48.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
47.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
47.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
47.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
47.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
47.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
47.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
47.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
46.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
46.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
46.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
46.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
46.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
46.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
45.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
45.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
45.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
45.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
44.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
44.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
43.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
43.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
42.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
42.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
41.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
40.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
39.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
39.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
39.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
38.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
38.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
38.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
37.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
37.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
36.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
36.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
35.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
35.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
34.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
34.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
34.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
33.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
33.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
33.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
32.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
32.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
32.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
31.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
30.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
29.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
28.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
28.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
27.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
27.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
27.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
27.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
27.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
26.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
26.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
26.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
25.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
24.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
24.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
24.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
23.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
23.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
22.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
22.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
21.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
21.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
20.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
20.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
20.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
20.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
19.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
19.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
19.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
19.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
18.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
16.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
16.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
12.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
11.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
11.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 13.8
Samples: 4
Max nTPM: 14.1
Min nTPM: 13.1
Sample A
Male
14.0
Sample B
Male
13.9
Sample C
Female
13.1
Sample D
Female
14.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.