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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
74.0
nTPM
HPA Brain:
76.9
nTPM
GTEx:
74.0
nTPM
FANTOM5:
42.7
Scaled Tags Per Million
Pig:
76.7
nTPM
Mouse:
73.5
nTPM
Allen mouse:
9.1
Expression energy
HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA052128
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
76.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 67.5
1911
Female, age 85, right hemisphere
77.0
2621
Female, age 67, right hemisphere
76.2
2148
Female, age 91, left hemisphere
72.8
1898
Male, age 80, left hemisphere
69.4
1855
Male, age 76, left hemisphere
67.0
2529
Female, age 94, left hemisphere
42.7
Dentate gyrus nTPM: 70.4
1927
Female, age 91, both hemispheres
93.2
2531
Female, age 67, both hemispheres
76.1
2010
Male, age 76, both hemispheres
71.2
2246
Female, age 85, both hemispheres
70.6
2530
Female, age 94, left hemisphere
65.0
2528
Male, age 74, both hemispheres
46.3
Entorhinal gyrus nTPM: 70.6
2613
Female, age 94, left hemisphere
114.4
1787
Male, age 76, left hemisphere
71.7
1938
Female, age 85, left hemisphere
70.3
2764
Male, age 80, right hemisphere
69.2
2686
Male, age 75, right hemisphere
56.6
2117
Female, age 91, right hemisphere
41.6
Hippocampus, CA1 nTPM: 75.8
2749
Male, age 80, left hemisphere
128.3
1873
Female, age 85, both hemispheres
86.6
2045
Male, age 76, both hemispheres
65.4
2527
Male, age 74, both hemispheres
57.4
2082
Female, age 91, right hemisphere
41.5
Hippocampus, CA2 nTPM: 72.5
1892
Male, age 76, both hemispheres
114.7
1963
Male, age 80, left hemisphere
88.6
1940
Female, age 85, left hemisphere
71.4
2437
Female, age 94, left hemisphere
57.1
2113
Female, age 91, right hemisphere
52.3
2249
Male, age 74, both hemispheres
50.6
Hippocampus, CA3 nTPM: 76.9
2137
Male, age 80, left hemisphere
104.3
1867
Male, age 76, both hemispheres
90.4
2620
Female, age 94, left hemisphere
88.2
2861
Female, age 67, both hemispheres
71.8
1891
Female, age 85, both hemispheres
64.0
2436
Male, age 74, both hemispheres
42.7
Parahippocampal cortex nTPM: 66.2
2622
Female, age 67, right hemisphere
84.3
2245
Female, age 91, both hemispheres
79.9
1990
Female, age 91, right hemisphere
79.7
2532
Female, age 72, left hemisphere
72.3
1850
Male, age 80, both hemispheres
69.3
1933
Female, age 85, both hemispheres
63.2
2693
Female, age 94, both hemispheres
61.6
2250
Female, age 67, right hemisphere
54.6
2018
Male, age 76, both hemispheres
51.8
2692
Male, age 74, both hemispheres
45.2
Perirhinal gyrus nTPM: 72.4
1847
Female, age 91, left hemisphere
86.3
2848
Male, age 76, right hemisphere
76.3
1841
Female, age 85, right hemisphere
67.2
1794
Male, age 80, right hemisphere
66.6
2521
Female, age 94, right hemisphere
65.4
Subiculum nTPM: 57.4
1977
Female, age 85, both hemispheres
70.2
1901
Male, age 80, both hemispheres
70.0
2042
Male, age 76, both hemispheres
59.4
2438
Female, age 94, left hemisphere
51.9
2729
Female, age 91, right hemisphere
49.2
2619
Male, age 74, both hemispheres
43.8
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
74.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 74.0
Samples: 197
Max nTPM: 168.8
Min nTPM: 8.1
Std nTPM: 35.7
Median nTPM: 73.5
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
168.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
159.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
157.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
151.7
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
148.3
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
141.9
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
140.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
137.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
134.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
133.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
133.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
132.6
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
132.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
132.3
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
131.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
128.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
127.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
126.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
126.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
125.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
124.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
124.1
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
124.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
122.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
118.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
117.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
116.8
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
114.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
112.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
112.2
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
111.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
111.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
111.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
110.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
110.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
109.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
108.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
107.3
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
107.1
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
104.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
103.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
103.1
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
102.8
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
102.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
102.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
100.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
100.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
100.0
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
99.1
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
98.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
97.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
97.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
97.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
96.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
94.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
94.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
94.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
93.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
93.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
93.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
92.9
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
92.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
92.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
91.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
91.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
91.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
91.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
91.3
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
89.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
89.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
88.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
88.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
88.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
88.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
87.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
85.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
84.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
84.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
83.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
83.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
82.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
82.5
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
82.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
82.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
81.9
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
81.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
81.8
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
81.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
79.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
78.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
77.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
77.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
76.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
76.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
76.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
76.0
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
75.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
75.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
73.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
72.4
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
71.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
71.5
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
70.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
70.0
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
69.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
68.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
67.8
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
67.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
67.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
66.7
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
66.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
65.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
65.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
63.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
62.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
62.0
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
61.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
60.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
60.2
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
58.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
57.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
56.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
56.5
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
56.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
56.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
55.7
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
55.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
53.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
53.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
52.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
52.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
52.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
52.0
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
52.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
51.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
51.1
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
50.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
48.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
48.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
48.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
48.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
47.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
46.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
46.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
45.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
45.4
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
45.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
44.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
44.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
44.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
42.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
40.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
40.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
40.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
39.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
39.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
38.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
38.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
37.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
37.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
36.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
36.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
35.9
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
35.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
35.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
35.3
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
34.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
34.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
34.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
33.4
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
33.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
32.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
32.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
32.5
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
32.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
31.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
30.1
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
29.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
29.7
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
24.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
24.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
24.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
24.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
23.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
23.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
23.0
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
21.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
20.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
18.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
18.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
18.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
16.7
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
16.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
14.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
14.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
11.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
8.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
73.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 71.9
Samples: 4
Max nTPM: 75.8
Min nTPM: 66.1
Sample A
Male
70.8
Sample B
Male
75.0
Sample C
Female
66.1
Sample D
Female
75.8
Hippocampal formation nTPM: 73.6
Samples: 4
Max nTPM: 89.7
Min nTPM: 64.4
Sample A
Male
64.4
Sample B
Male
75.5
Sample C
Female
89.7
Sample D
Female
64.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.