We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
19.6
nTPM
HPA Brain:
88.9
nTPM
GTEx:
19.6
nTPM
FANTOM5:
144.9
Scaled Tags Per Million
Pig:
19.8
nTPM
Mouse:
10.9
nTPM
Allen mouse:
0.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
88.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 82.5
2219
Male, age 76, both hemispheres
105.5
1833
Male, age 53, unknown
94.9
2411
Female, age 72, unknown
93.9
1830
Male, age 51, unknown
92.1
1870
Female, age 42, unknown
82.1
2586
Male, age 75, left hemisphere
75.8
2019
Male, age 18, unknown
73.1
2828
Female, age 72, unknown
71.3
2666
Male, age 74, left hemisphere
68.9
1827
Male, age 72, unknown
67.7
Dorsal raphe nucleus nTPM: 59.6
2750
Male, age 76, both hemispheres
85.8
2016
Female, age 72, unknown
58.3
1828
Male, age 53, unknown
56.9
2047
Male, age 72, unknown
56.0
2298
Female, age 72, unknown
41.1
Inferior colliculus nTPM: 66.4
2849
Male, age 72, unknown
72.1
1890
Male, age 53, unknown
66.3
1848
Female, age 42, unknown
65.3
2097
Female, age 72, unknown
61.8
Median raphe nucleus nTPM: 59.8
2220
Male, age 76, midline
59.8
Periaquaductal grey, anterior nTPM: 57.6
2502
Female, age 75, unknown
66.5
1947
Male, age 18, unknown
54.5
1795
Male, age 51, unknown
51.7
Periaquaductal grey, dorsal nTPM: 51.2
2464
Female, age 72, unknown
68.3
1831
Male, age 72, unknown
54.0
1840
Male, age 53, unknown
42.7
2850
Male, age 76, both hemispheres
39.7
Periaquaductal grey, lateral nTPM: 56.9
2053
Male, age 18, unknown
66.2
2272
Male, age 74, both hemispheres
56.5
2140
Male, age 76, both hemispheres
47.8
Pretectal area nTPM: 57.8
2316
Male, age 76, right hemisphere
78.8
2407
Male, age 75, both hemispheres
76.3
2825
Male, age 18, unknown
65.6
1815
Male, age 53, unknown
63.7
2667
Female, age 75, unknown
53.8
2007
Male, age 72, unknown
52.0
1817
Female, age 42, unknown
51.3
1944
Female, age 72, unknown
50.9
2224
Female, age 72, unknown
50.8
2273
Male, age 74, both hemispheres
49.4
1816
Male, age 51, unknown
43.6
Red nucleus nTPM: 88.9
1904
Male, age 53, unknown
103.3
2503
Female, age 72, unknown
100.0
1865
Male, age 51, unknown
98.3
2823
Male, age 76, right hemisphere
97.2
2769
Male, age 72, unknown
90.8
2227
Male, age 72, unknown
89.4
1821
Female, age 72, unknown
88.1
2588
Male, age 74, left hemisphere
85.9
1954
Female, age 42, unknown
83.4
2785
Male, age 18, unknown
82.4
2584
Male, age 75, left hemisphere
76.0
2725
Female, age 75, unknown
72.4
Substantia nigra nTPM: 67.6
2583
Male, age 75, right hemisphere
83.4
2590
Female, age 75, unknown
76.3
2699
Male, age 18, unknown
75.5
1851
Male, age 51, unknown
74.4
2409
Female, age 72, unknown
68.2
1941
Male, age 53, unknown
65.5
2665
Male, age 74, both hemispheres
62.0
2241
Male, age 72, unknown
58.3
1889
Female, age 72, unknown
57.6
1916
Female, age 42, unknown
54.9
Superior colliculus nTPM: 72.9
1913
Female, age 42, unknown
111.0
1995
Male, age 72, unknown
91.8
1895
Male, age 76, right hemisphere
79.4
1839
Male, age 51, unknown
74.1
2587
Male, age 74, left hemisphere
70.0
2668
Female, age 75, unknown
69.7
1796
Male, age 53, unknown
63.5
2261
Male, age 18, unknown
58.8
2087
Female, age 72, unknown
56.3
2664
Male, age 75, both hemispheres
54.5
Ventral tegmental area nTPM: 73.8
2223
Female, age 72, unknown
86.8
2410
Female, age 72, unknown
85.9
1942
Male, age 51, unknown
72.7
1915
Female, age 42, unknown
66.0
2021
Male, age 53, unknown
65.8
2218
Male, age 76, both hemispheres
65.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
19.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 19.6
Samples: 139
Max nTPM: 48.7
Min nTPM: 7.8
Std nTPM: 7.2
Median nTPM: 18.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
48.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
41.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
40.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
36.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
35.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
34.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
34.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
34.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
33.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
32.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
32.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
31.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
31.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
31.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
31.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
28.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
28.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
27.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
27.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
27.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
26.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
26.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
26.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
26.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
25.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
25.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
24.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
23.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
23.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
23.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
22.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
22.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
22.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
22.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
22.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
22.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
22.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
22.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
21.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
21.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
21.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
21.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
21.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
21.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
21.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
21.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
21.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
20.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
20.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
20.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
20.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
20.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
19.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
19.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
19.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
19.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
19.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
19.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
19.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
18.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
18.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
18.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
18.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
18.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
18.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
18.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
18.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
18.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
18.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
18.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
18.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
18.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
18.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
17.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
17.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
17.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
17.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
17.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
17.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
17.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
17.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
17.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
17.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
17.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
17.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
17.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
17.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
16.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
16.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
16.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
16.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
16.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
16.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
16.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
16.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
16.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
16.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
16.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
15.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
15.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
15.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
15.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
15.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
15.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
15.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
15.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
14.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
14.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
14.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
14.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
14.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
14.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
13.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
13.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
13.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
13.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
12.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
12.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
12.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
12.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
12.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
11.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
11.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
11.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
11.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
11.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
11.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
10.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
10.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
10.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
10.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
10.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
10.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
9.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
9.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
9.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
9.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
8.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
7.8
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
10.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 10.9
Samples: 4
Max nTPM: 11.2
Min nTPM: 10.5
Sample A
Male
10.5
Sample B
Male
10.8
Sample C
Female
11.2
Sample D
Female
11.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.