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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
89.9
nTPM
HPA Brain:
155.9
nTPM
GTEx:
89.9
nTPM
FANTOM5:
373.4
Scaled Tags Per Million
Pig:
7.7
nTPM
Mouse:
0.1
nTPM
Allen mouse:
0.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
155.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 101.8
2019
Male, age 18, unknown
145.3
1833
Male, age 53, unknown
131.7
1830
Male, age 51, unknown
128.8
2411
Female, age 72, unknown
123.6
1870
Female, age 42, unknown
113.8
2828
Female, age 72, unknown
89.7
2666
Male, age 74, left hemisphere
86.1
2219
Male, age 76, both hemispheres
80.8
1827
Male, age 72, unknown
65.7
2586
Male, age 75, left hemisphere
52.9
Dorsal raphe nucleus nTPM: 71.4
2750
Male, age 76, both hemispheres
124.6
1828
Male, age 53, unknown
74.8
2016
Female, age 72, unknown
70.6
2047
Male, age 72, unknown
46.1
2298
Female, age 72, unknown
41.0
Inferior colliculus nTPM: 74.2
1890
Male, age 53, unknown
78.2
1848
Female, age 42, unknown
74.7
2849
Male, age 72, unknown
72.9
2097
Female, age 72, unknown
71.0
Median raphe nucleus nTPM: 55.2
2220
Male, age 76, midline
55.2
Periaquaductal grey, anterior nTPM: 47.3
1947
Male, age 18, unknown
56.0
2502
Female, age 75, unknown
44.9
1795
Male, age 51, unknown
40.9
Periaquaductal grey, dorsal nTPM: 43.0
2464
Female, age 72, unknown
81.9
1831
Male, age 72, unknown
39.3
2850
Male, age 76, both hemispheres
25.6
1840
Male, age 53, unknown
24.9
Periaquaductal grey, lateral nTPM: 47.5
2272
Male, age 74, both hemispheres
70.3
2053
Male, age 18, unknown
46.6
2140
Male, age 76, both hemispheres
25.6
Pretectal area nTPM: 59.8
1815
Male, age 53, unknown
90.2
2316
Male, age 76, right hemisphere
89.6
1817
Female, age 42, unknown
88.7
2007
Male, age 72, unknown
75.7
2825
Male, age 18, unknown
55.5
2407
Male, age 75, both hemispheres
54.8
2273
Male, age 74, both hemispheres
53.9
2224
Female, age 72, unknown
42.8
1816
Male, age 51, unknown
38.1
1944
Female, age 72, unknown
37.1
2667
Female, age 75, unknown
31.7
Red nucleus nTPM: 155.9
2823
Male, age 76, right hemisphere
226.4
1821
Female, age 72, unknown
200.9
1904
Male, age 53, unknown
176.4
1865
Male, age 51, unknown
174.0
1954
Female, age 42, unknown
169.0
2227
Male, age 72, unknown
161.3
2769
Male, age 72, unknown
158.9
2785
Male, age 18, unknown
157.4
2503
Female, age 72, unknown
153.7
2725
Female, age 75, unknown
131.0
2588
Male, age 74, left hemisphere
105.4
2584
Male, age 75, left hemisphere
56.7
Substantia nigra nTPM: 68.8
2590
Female, age 75, unknown
106.9
2409
Female, age 72, unknown
89.4
1889
Female, age 72, unknown
83.9
2583
Male, age 75, right hemisphere
79.4
2241
Male, age 72, unknown
66.4
1851
Male, age 51, unknown
64.6
1941
Male, age 53, unknown
56.5
1916
Female, age 42, unknown
55.2
2699
Male, age 18, unknown
50.8
2665
Male, age 74, both hemispheres
35.4
Superior colliculus nTPM: 78.3
1895
Male, age 76, right hemisphere
126.0
2587
Male, age 74, left hemisphere
101.2
1995
Male, age 72, unknown
95.9
2668
Female, age 75, unknown
93.5
1913
Female, age 42, unknown
90.3
1839
Male, age 51, unknown
89.1
1796
Male, age 53, unknown
55.2
2261
Male, age 18, unknown
47.5
2087
Female, age 72, unknown
47.4
2664
Male, age 75, both hemispheres
37.1
Ventral tegmental area nTPM: 72.7
2410
Female, age 72, unknown
102.4
2223
Female, age 72, unknown
99.9
1942
Male, age 51, unknown
63.2
1915
Female, age 42, unknown
60.5
2218
Male, age 76, both hemispheres
57.7
2021
Male, age 53, unknown
52.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
89.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 89.9
Samples: 139
Max nTPM: 541.3
Min nTPM: 16.4
Std nTPM: 69.7
Median nTPM: 67.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
541.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
325.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
295.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
266.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
258.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
246.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
242.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
212.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
208.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
194.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
192.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
191.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
190.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
181.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
180.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
172.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
159.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
151.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
149.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
141.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
132.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
130.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
129.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
128.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
126.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
120.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
120.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
120.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
120.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
119.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
114.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
114.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
112.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
110.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
108.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
108.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
108.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
104.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
99.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
99.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
98.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
97.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
94.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
93.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
92.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
89.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
88.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
87.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
86.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
85.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
85.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
85.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
83.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
81.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
80.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
79.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
76.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
75.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
74.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
73.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
73.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
72.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
71.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
70.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
70.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
69.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
68.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
67.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
67.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
67.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
66.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
66.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
64.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
64.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
64.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
64.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
63.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
62.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
62.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
61.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
60.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
60.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
60.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
59.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
59.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
58.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
58.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
58.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
58.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
57.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
56.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
56.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
56.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
56.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
55.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
54.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
54.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
53.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
52.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
52.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
51.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
50.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
50.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
50.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
50.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
49.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
49.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
48.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
47.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
47.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
46.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
46.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
45.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
43.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
41.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
41.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
41.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
40.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
39.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
39.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
39.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
38.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
37.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
36.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
36.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
34.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
33.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
33.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
32.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
32.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
31.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
28.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
27.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
25.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
24.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
19.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
17.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
16.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
16.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 0.1
Samples: 4
Max nTPM: 0.5
Min nTPM: 0.0
Sample A
Male
0.0
Sample B
Male
0.0
Sample C
Female
0.5
Sample D
Female
0.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.