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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
15.8
nTPM
HPA Brain:
35.0
nTPM
GTEx:
15.8
nTPM
FANTOM5:
4.8
Scaled Tags Per Million
Pig:
16.8
nTPM
Mouse:
23.0
nTPM
Allen mouse:
13.2
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 28.3
2019
Male, age 18, unknown
52.8
2219
Male, age 76, both hemispheres
35.9
2586
Male, age 75, left hemisphere
32.3
2828
Female, age 72, unknown
30.6
2666
Male, age 74, left hemisphere
28.6
1827
Male, age 72, unknown
27.6
1830
Male, age 51, unknown
21.2
1833
Male, age 53, unknown
19.1
1870
Female, age 42, unknown
18.3
2411
Female, age 72, unknown
17.0
Dorsal raphe nucleus nTPM: 28.2
1828
Male, age 53, unknown
49.9
2047
Male, age 72, unknown
37.4
2750
Male, age 76, both hemispheres
19.1
2298
Female, age 72, unknown
18.5
2016
Female, age 72, unknown
16.2
Inferior colliculus nTPM: 35.0
2097
Female, age 72, unknown
39.4
1890
Male, age 53, unknown
37.6
1848
Female, age 42, unknown
34.8
2849
Male, age 72, unknown
28.1
Median raphe nucleus nTPM: 28.4
2220
Male, age 76, midline
28.4
Periaquaductal grey, anterior nTPM: 27.5
2502
Female, age 75, unknown
33.1
1795
Male, age 51, unknown
26.9
1947
Male, age 18, unknown
22.6
Periaquaductal grey, dorsal nTPM: 19.9
2464
Female, age 72, unknown
24.9
1831
Male, age 72, unknown
21.1
2850
Male, age 76, both hemispheres
20.6
1840
Male, age 53, unknown
13.2
Periaquaductal grey, lateral nTPM: 16.8
2140
Male, age 76, both hemispheres
19.1
2053
Male, age 18, unknown
15.7
2272
Male, age 74, both hemispheres
15.6
Pretectal area nTPM: 33.2
2007
Male, age 72, unknown
57.4
1817
Female, age 42, unknown
56.1
1816
Male, age 51, unknown
47.0
1944
Female, age 72, unknown
46.3
2667
Female, age 75, unknown
37.8
1815
Male, age 53, unknown
29.1
2407
Male, age 75, both hemispheres
22.2
2316
Male, age 76, right hemisphere
19.2
2825
Male, age 18, unknown
18.5
2224
Female, age 72, unknown
16.3
2273
Male, age 74, both hemispheres
15.2
Red nucleus nTPM: 29.4
2785
Male, age 18, unknown
45.5
2823
Male, age 76, right hemisphere
39.7
2588
Male, age 74, left hemisphere
33.3
2769
Male, age 72, unknown
29.6
1821
Female, age 72, unknown
29.2
1865
Male, age 51, unknown
29.1
2584
Male, age 75, left hemisphere
28.3
1954
Female, age 42, unknown
27.9
2227
Male, age 72, unknown
27.5
2503
Female, age 72, unknown
27.2
1904
Male, age 53, unknown
21.1
2725
Female, age 75, unknown
14.1
Substantia nigra nTPM: 23.6
1941
Male, age 53, unknown
51.4
1889
Female, age 72, unknown
38.0
2665
Male, age 74, both hemispheres
26.2
1916
Female, age 42, unknown
24.0
1851
Male, age 51, unknown
19.3
2590
Female, age 75, unknown
18.6
2583
Male, age 75, right hemisphere
16.3
2409
Female, age 72, unknown
15.4
2699
Male, age 18, unknown
14.2
2241
Male, age 72, unknown
12.4
Superior colliculus nTPM: 27.6
2087
Female, age 72, unknown
39.4
2668
Female, age 75, unknown
38.9
1895
Male, age 76, right hemisphere
35.8
2664
Male, age 75, both hemispheres
34.9
2261
Male, age 18, unknown
25.3
1839
Male, age 51, unknown
25.0
1796
Male, age 53, unknown
22.9
2587
Male, age 74, left hemisphere
19.1
1913
Female, age 42, unknown
17.7
1995
Male, age 72, unknown
17.2
Ventral tegmental area nTPM: 21.4
1915
Female, age 42, unknown
24.2
2223
Female, age 72, unknown
24.2
2410
Female, age 72, unknown
24.1
2218
Male, age 76, both hemispheres
23.9
1942
Male, age 51, unknown
19.1
2021
Male, age 53, unknown
13.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
15.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 15.8
Samples: 139
Max nTPM: 98.1
Min nTPM: 1.8
Std nTPM: 13.3
Median nTPM: 12.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
98.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
67.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
62.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
57.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
41.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
40.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
37.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
35.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
35.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
33.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
31.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
31.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
31.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
29.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
28.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
27.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
27.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
27.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
26.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
26.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
25.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
25.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
25.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
24.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
23.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
23.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
23.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
23.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
23.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
22.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
21.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
21.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
21.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
20.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
20.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
20.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
20.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
20.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
18.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
18.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
18.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
18.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
18.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
18.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
17.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
17.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
16.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
16.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
16.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
15.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
15.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
15.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
15.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
15.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
15.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
15.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
14.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
14.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
14.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
14.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
14.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
14.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
14.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
13.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
13.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
13.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
13.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
13.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
13.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
12.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
12.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
12.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
12.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
12.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
12.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
11.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
10.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
10.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
10.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
10.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
10.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
10.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
10.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
10.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
10.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
9.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
9.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
9.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
9.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
9.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
9.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
8.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
8.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
8.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
8.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
8.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
8.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
8.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
8.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
7.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
7.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
7.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
7.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
7.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
6.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
6.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
6.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
6.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
6.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
6.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
6.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
6.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
5.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
5.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
5.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
5.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
5.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
5.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
5.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
5.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
4.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
4.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
4.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
4.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
4.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
4.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
4.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
4.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
4.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
3.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
3.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
3.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
3.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
3.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
3.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
2.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
2.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
1.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 23.0
Samples: 4
Max nTPM: 23.7
Min nTPM: 21.2
Sample A
Male
23.6
Sample B
Male
21.2
Sample C
Female
23.5
Sample D
Female
23.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.