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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
478.9
nTPM
HPA Brain:
1295.6
nTPM
GTEx:
478.9
nTPM
FANTOM5:
1144.6
Scaled Tags Per Million
Pig:
790.9
nTPM
Mouse:
2398.7
nTPM
Allen mouse:
29.1
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA004177
Antibody CAB006252
Glial cells
Not detected
Medium
Neuronal cells
Medium
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1295.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 1032.1
1898
Male, age 80, left hemisphere
1450.7
1855
Male, age 76, left hemisphere
1107.9
2621
Female, age 67, right hemisphere
1037.8
2529
Female, age 94, left hemisphere
953.8
2148
Female, age 91, left hemisphere
883.8
1911
Female, age 85, right hemisphere
758.5
Dentate gyrus nTPM: 1039.2
2530
Female, age 94, left hemisphere
1317.7
2010
Male, age 76, both hemispheres
1156.9
1927
Female, age 91, both hemispheres
1153.3
2528
Male, age 74, both hemispheres
971.4
2246
Female, age 85, both hemispheres
891.2
2531
Female, age 67, both hemispheres
744.7
Entorhinal gyrus nTPM: 1037.6
2764
Male, age 80, right hemisphere
1437.1
2613
Female, age 94, left hemisphere
1147.1
1938
Female, age 85, left hemisphere
1055.8
1787
Male, age 76, left hemisphere
927.4
2117
Female, age 91, right hemisphere
846.0
2686
Male, age 75, right hemisphere
812.2
Hippocampus, CA1 nTPM: 1210.8
2749
Male, age 80, left hemisphere
1939.3
1873
Female, age 85, both hemispheres
1110.3
2527
Male, age 74, both hemispheres
1053.2
2045
Male, age 76, both hemispheres
983.7
2082
Female, age 91, right hemisphere
967.3
Hippocampus, CA2 nTPM: 1100.4
1963
Male, age 80, left hemisphere
1308.2
1892
Male, age 76, both hemispheres
1296.2
2249
Male, age 74, both hemispheres
1127.0
2437
Female, age 94, left hemisphere
1082.8
2113
Female, age 91, right hemisphere
910.0
1940
Female, age 85, left hemisphere
878.2
Hippocampus, CA3 nTPM: 1094.0
2436
Male, age 74, both hemispheres
1357.2
2137
Male, age 80, left hemisphere
1341.6
1867
Male, age 76, both hemispheres
1146.1
2620
Female, age 94, left hemisphere
1010.6
2861
Female, age 67, both hemispheres
893.0
1891
Female, age 85, both hemispheres
815.3
Parahippocampal cortex nTPM: 1010.6
1850
Male, age 80, both hemispheres
1319.0
2245
Female, age 91, both hemispheres
1155.9
1933
Female, age 85, both hemispheres
1089.5
1990
Female, age 91, right hemisphere
1063.6
2532
Female, age 72, left hemisphere
1050.1
2250
Female, age 67, right hemisphere
1034.1
2018
Male, age 76, both hemispheres
955.8
2693
Female, age 94, both hemispheres
914.3
2622
Female, age 67, right hemisphere
815.8
2692
Male, age 74, both hemispheres
708.0
Perirhinal gyrus nTPM: 1295.6
1847
Female, age 91, left hemisphere
1636.1
1794
Male, age 80, right hemisphere
1431.7
1841
Female, age 85, right hemisphere
1284.4
2521
Female, age 94, right hemisphere
1118.5
2848
Male, age 76, right hemisphere
1007.3
Subiculum nTPM: 905.1
1977
Female, age 85, both hemispheres
1029.1
1901
Male, age 80, both hemispheres
1024.5
2619
Male, age 74, both hemispheres
939.8
2438
Female, age 94, left hemisphere
891.8
2042
Male, age 76, both hemispheres
793.9
2729
Female, age 91, right hemisphere
751.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
478.9
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 478.9
Samples: 197
Max nTPM: 934.3
Min nTPM: 205.7
Std nTPM: 157.8
Median nTPM: 449.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
934.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
919.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
853.7
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
838.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
832.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
823.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
823.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
815.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
796.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
776.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
775.0
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
749.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
743.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
737.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
734.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
733.6
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
730.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
717.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
713.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
705.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
704.6
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
701.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
699.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
688.8
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
680.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
677.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
677.5
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
674.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
674.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
672.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
672.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
664.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
662.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
656.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
656.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
651.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
635.8
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
633.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
633.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
625.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
622.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
613.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
612.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
605.9
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
603.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
595.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
591.2
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
588.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
575.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
568.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
564.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
557.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
556.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
555.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
548.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
547.8
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
546.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
546.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
546.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
543.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
537.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
534.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
531.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
526.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
523.3
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
522.5
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
519.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
515.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
513.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
512.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
511.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
511.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
510.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
506.7
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
504.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
502.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
497.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
497.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
492.8
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
490.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
485.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
482.9
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
479.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
478.4
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
475.3
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
473.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
472.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
470.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
469.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
467.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
467.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
467.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
466.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
464.8
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
461.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
460.2
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
456.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
455.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
449.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
447.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
446.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
446.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
445.5
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
445.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
444.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
442.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
440.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
439.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
436.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
436.3
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
435.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
434.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
433.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
431.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
428.8
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
426.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
425.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
424.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
421.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
418.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
416.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
416.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
415.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
415.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
414.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
414.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
408.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
407.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
405.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
404.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
404.2
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
398.7
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
384.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
384.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
382.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
380.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
378.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
371.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
369.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
369.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
367.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
364.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
363.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
362.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
360.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
354.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
352.9
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
351.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
349.3
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
349.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
346.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
344.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
343.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
343.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
343.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
342.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
339.1
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
338.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
338.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
338.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
326.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
325.7
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
325.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
324.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
323.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
323.4
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
321.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
315.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
314.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
313.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
313.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
312.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
308.2
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
304.8
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
302.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
299.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
293.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
286.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
283.6
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
278.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
276.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
276.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
276.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
275.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
273.7
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
273.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
270.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
265.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
264.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
249.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
249.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
248.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
246.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
218.3
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
216.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
211.6
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
205.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2398.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 2103.1
Samples: 4
Max nTPM: 2240.6
Min nTPM: 1934.5
Sample A
Male
1934.5
Sample B
Male
2110.2
Sample C
Female
2127.2
Sample D
Female
2240.6
Hippocampal formation nTPM: 2398.7
Samples: 4
Max nTPM: 2511.4
Min nTPM: 2262.1
Sample A
Male
2423.3
Sample B
Male
2262.1
Sample C
Female
2511.4
Sample D
Female
2398.0
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.