We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
32.5
nTPM
HPA Brain:
48.6
nTPM
GTEx:
32.5
nTPM
FANTOM5:
100.4
Scaled Tags Per Million
Pig:
42.2
nTPM
Mouse:
21.5
nTPM
Allen mouse:
3.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA026687
Glial cells
Not detected
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
48.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 35.3
1898
Male, age 80, left hemisphere
54.5
1911
Female, age 85, right hemisphere
34.5
1855
Male, age 76, left hemisphere
34.3
2621
Female, age 67, right hemisphere
29.6
2529
Female, age 94, left hemisphere
29.4
2148
Female, age 91, left hemisphere
29.2
Dentate gyrus nTPM: 36.0
1927
Female, age 91, both hemispheres
53.6
2010
Male, age 76, both hemispheres
38.0
2246
Female, age 85, both hemispheres
36.6
2528
Male, age 74, both hemispheres
33.4
2530
Female, age 94, left hemisphere
30.2
2531
Female, age 67, both hemispheres
24.2
Entorhinal gyrus nTPM: 36.6
1938
Female, age 85, left hemisphere
51.6
1787
Male, age 76, left hemisphere
40.7
2764
Male, age 80, right hemisphere
39.2
2613
Female, age 94, left hemisphere
33.0
2117
Female, age 91, right hemisphere
30.8
2686
Male, age 75, right hemisphere
24.4
Hippocampus, CA1 nTPM: 41.9
2749
Male, age 80, left hemisphere
58.6
1873
Female, age 85, both hemispheres
44.4
2045
Male, age 76, both hemispheres
42.4
2082
Female, age 91, right hemisphere
32.3
2527
Male, age 74, both hemispheres
32.0
Hippocampus, CA2 nTPM: 40.1
1892
Male, age 76, both hemispheres
54.9
2249
Male, age 74, both hemispheres
46.5
1963
Male, age 80, left hemisphere
41.7
1940
Female, age 85, left hemisphere
38.8
2113
Female, age 91, right hemisphere
30.3
2437
Female, age 94, left hemisphere
28.7
Hippocampus, CA3 nTPM: 36.1
2137
Male, age 80, left hemisphere
49.3
1867
Male, age 76, both hemispheres
42.4
1891
Female, age 85, both hemispheres
38.6
2436
Male, age 74, both hemispheres
37.9
2620
Female, age 94, left hemisphere
30.0
2861
Female, age 67, both hemispheres
18.5
Parahippocampal cortex nTPM: 38.7
1850
Male, age 80, both hemispheres
51.5
1990
Female, age 91, right hemisphere
47.6
2250
Female, age 67, right hemisphere
42.9
1933
Female, age 85, both hemispheres
42.6
2693
Female, age 94, both hemispheres
41.0
2245
Female, age 91, both hemispheres
38.9
2018
Male, age 76, both hemispheres
37.8
2532
Female, age 72, left hemisphere
33.7
2692
Male, age 74, both hemispheres
29.6
2622
Female, age 67, right hemisphere
21.7
Perirhinal gyrus nTPM: 48.6
1847
Female, age 91, left hemisphere
59.3
1841
Female, age 85, right hemisphere
55.3
1794
Male, age 80, right hemisphere
45.5
2521
Female, age 94, right hemisphere
44.9
2848
Male, age 76, right hemisphere
37.7
Subiculum nTPM: 33.7
1901
Male, age 80, both hemispheres
42.9
1977
Female, age 85, both hemispheres
40.3
2042
Male, age 76, both hemispheres
33.6
2438
Female, age 94, left hemisphere
31.1
2729
Female, age 91, right hemisphere
27.5
2619
Male, age 74, both hemispheres
26.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
32.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 32.5
Samples: 197
Max nTPM: 77.6
Min nTPM: 11.2
Std nTPM: 10.9
Median nTPM: 30.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
77.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
66.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
64.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
60.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
58.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
55.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
53.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
50.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
50.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
49.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
48.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
48.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
47.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
47.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
46.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
46.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
46.5
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
46.4
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
46.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
46.2
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
46.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
45.8
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
45.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
45.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
45.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
45.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
44.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
44.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
44.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
43.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
43.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
43.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
43.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
43.2
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
43.1
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
42.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
42.8
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
42.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
42.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
41.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
41.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
41.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
41.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
41.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
41.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
41.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
40.5
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
40.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
40.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
40.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
40.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
39.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
39.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
39.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
39.4
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
38.9
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
38.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
38.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
38.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
38.0
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
37.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
37.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
37.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
37.5
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
37.4
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
37.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
37.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
36.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
36.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
36.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
36.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
36.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
35.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
35.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
35.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
35.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
35.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
35.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
35.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
35.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
35.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
35.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
35.0
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
35.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
34.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
34.5
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
34.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
33.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
33.7
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
33.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
32.7
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
32.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
31.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
31.4
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
31.2
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
30.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
30.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
30.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
30.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
30.1
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
29.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
29.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
29.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
29.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
29.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
29.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
29.1
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
29.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
28.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
28.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
28.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
28.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
28.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
28.0
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
28.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
28.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
27.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
27.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
27.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
27.5
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
27.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
27.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
27.4
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
27.4
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
27.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
27.3
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
27.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
26.8
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
26.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
26.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
26.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
26.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
26.4
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
26.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
26.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
26.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
25.7
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
25.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
25.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
25.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
25.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
24.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
24.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
24.6
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
24.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
24.5
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
24.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
24.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
24.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
23.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
23.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
23.6
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
23.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
23.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
23.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
23.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
23.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
23.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
22.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
22.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
22.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
21.8
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
21.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
21.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
21.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
21.2
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
21.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
21.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
21.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
20.8
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
20.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
20.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
20.0
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
19.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
19.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
19.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
19.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
19.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
19.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
19.1
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
18.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
18.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
18.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
18.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
18.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
18.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
17.9
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
17.8
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
17.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
17.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
16.3
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
16.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
15.4
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
15.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
14.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
11.5
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
11.2
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 19.6
Samples: 4
Max nTPM: 21.7
Min nTPM: 18.2
Sample A
Male
18.2
Sample B
Male
21.7
Sample C
Female
20.1
Sample D
Female
18.3
Hippocampal formation nTPM: 21.5
Samples: 4
Max nTPM: 23.7
Min nTPM: 19.4
Sample A
Male
22.2
Sample B
Male
23.7
Sample C
Female
19.4
Sample D
Female
20.7
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.