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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
30.7
nTPM
HPA Brain:
191.6
nTPM
GTEx:
30.7
nTPM
FANTOM5:
123.2
Scaled Tags Per Million
Pig:
258.3
nTPM
Mouse:
296.5
nTPM
Allen mouse:
10.2
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
191.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 61.1
1898
Male, age 80, left hemisphere
88.4
2621
Female, age 67, right hemisphere
72.9
1855
Male, age 76, left hemisphere
54.5
2148
Female, age 91, left hemisphere
53.6
1911
Female, age 85, right hemisphere
49.3
2529
Female, age 94, left hemisphere
48.2
Dentate gyrus nTPM: 65.1
1927
Female, age 91, both hemispheres
81.0
2246
Female, age 85, both hemispheres
70.8
2531
Female, age 67, both hemispheres
63.8
2530
Female, age 94, left hemisphere
60.2
2528
Male, age 74, both hemispheres
59.4
2010
Male, age 76, both hemispheres
55.7
Entorhinal gyrus nTPM: 107.5
2764
Male, age 80, right hemisphere
143.3
1787
Male, age 76, left hemisphere
128.2
2613
Female, age 94, left hemisphere
122.7
1938
Female, age 85, left hemisphere
108.6
2686
Male, age 75, right hemisphere
83.1
2117
Female, age 91, right hemisphere
59.1
Hippocampus, CA1 nTPM: 70.7
2749
Male, age 80, left hemisphere
104.7
1873
Female, age 85, both hemispheres
70.7
2082
Female, age 91, right hemisphere
70.6
2527
Male, age 74, both hemispheres
60.6
2045
Male, age 76, both hemispheres
47.1
Hippocampus, CA2 nTPM: 86.0
1940
Female, age 85, left hemisphere
129.3
1892
Male, age 76, both hemispheres
96.5
2113
Female, age 91, right hemisphere
81.3
1963
Male, age 80, left hemisphere
79.0
2437
Female, age 94, left hemisphere
69.5
2249
Male, age 74, both hemispheres
60.6
Hippocampus, CA3 nTPM: 68.8
2137
Male, age 80, left hemisphere
95.7
1867
Male, age 76, both hemispheres
72.4
2436
Male, age 74, both hemispheres
66.2
2620
Female, age 94, left hemisphere
61.2
1891
Female, age 85, both hemispheres
60.2
2861
Female, age 67, both hemispheres
57.3
Parahippocampal cortex nTPM: 125.0
1850
Male, age 80, both hemispheres
181.4
2693
Female, age 94, both hemispheres
151.7
1933
Female, age 85, both hemispheres
137.2
2532
Female, age 72, left hemisphere
136.4
1990
Female, age 91, right hemisphere
130.8
2250
Female, age 67, right hemisphere
130.3
2245
Female, age 91, both hemispheres
124.0
2622
Female, age 67, right hemisphere
95.2
2018
Male, age 76, both hemispheres
91.2
2692
Male, age 74, both hemispheres
72.2
Perirhinal gyrus nTPM: 191.6
2521
Female, age 94, right hemisphere
224.6
1794
Male, age 80, right hemisphere
204.6
1847
Female, age 91, left hemisphere
202.9
1841
Female, age 85, right hemisphere
200.2
2848
Male, age 76, right hemisphere
125.8
Subiculum nTPM: 69.7
1977
Female, age 85, both hemispheres
108.0
1901
Male, age 80, both hemispheres
83.3
2619
Male, age 74, both hemispheres
78.2
2042
Male, age 76, both hemispheres
54.6
2729
Female, age 91, right hemisphere
48.0
2438
Female, age 94, left hemisphere
46.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 30.7
Samples: 197
Max nTPM: 145.6
Min nTPM: 5.8
Std nTPM: 24.7
Median nTPM: 22.1
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
145.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
141.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
127.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
125.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
113.3
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
111.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
95.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
95.2
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
91.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
88.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
85.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
84.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
71.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
70.3
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
67.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
62.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
62.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
61.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
61.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
56.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
55.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
54.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
54.1
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
53.6
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
53.3
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
52.5
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
51.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
51.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
51.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
49.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
48.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
46.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
46.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
43.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
43.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
42.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
42.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
41.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
41.6
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
41.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
40.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
40.1
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
39.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
39.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
39.0
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
38.4
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
38.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
37.6
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
37.5
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
36.8
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
36.8
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
36.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
35.2
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
35.0
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
35.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
33.6
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
33.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
33.1
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
32.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
32.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
32.3
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
32.2
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
32.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
31.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
31.8
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
31.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
30.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
30.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
30.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
30.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
29.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
29.2
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
29.0
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
28.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
28.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
28.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
28.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
27.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
26.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
26.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
26.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
26.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
25.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
25.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
25.6
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
25.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
24.7
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
24.7
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
23.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
23.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
23.8
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
23.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
23.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
23.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
23.3
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
22.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
22.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
22.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
22.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
21.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
21.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
21.3
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
21.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
21.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
21.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
20.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
20.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
20.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
20.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
20.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
20.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
20.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
19.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
19.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
19.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
19.2
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
19.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
19.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
18.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
18.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
18.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
18.2
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
18.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
18.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
17.7
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
17.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
17.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
17.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
17.3
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
17.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
17.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
17.0
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
16.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
16.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
16.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
16.4
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
16.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
16.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
16.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
16.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
16.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
16.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
16.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
15.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
15.6
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
15.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
15.4
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
15.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
15.1
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
15.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
14.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
14.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
14.6
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
14.4
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
14.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
14.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
14.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
14.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
14.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
14.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
14.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
14.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
13.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
13.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
13.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
13.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
13.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
13.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
12.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
12.8
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
12.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
12.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
12.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
12.2
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
12.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
12.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
11.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
11.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
11.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
11.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
10.9
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
10.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
10.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
10.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
10.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
10.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
10.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
10.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
9.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
9.5
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
9.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
9.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
8.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
8.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
7.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
7.4
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
5.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
296.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 296.5
Samples: 4
Max nTPM: 322.2
Min nTPM: 254.6
Sample A
Male
303.3
Sample B
Male
322.2
Sample C
Female
254.6
Sample D
Female
305.9
Hippocampal formation nTPM: 218.8
Samples: 4
Max nTPM: 227.5
Min nTPM: 203.6
Sample A
Male
221.4
Sample B
Male
222.7
Sample C
Female
227.5
Sample D
Female
203.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.