We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
92.8
Sample id
Sample description
nTPM
Amygdala nTPM: 79.8
2814
Male, age 76, right hemisphere
136.9
2517
Female, age 94, left hemisphere
75.7
2514
Male, age 75, right hemisphere
70.5
1987
Female, age 91, left hemisphere
58.5
2695
Female, age 67, right hemisphere
57.5
Basal amygdala nTPM: 87.3
1955
Male, age 76, both hemispheres
120.9
2685
Female, age 94, left hemisphere
112.5
2110
Male, age 80, left hemisphere
87.2
2243
Female, age 91, right hemisphere
77.5
2827
Female, age 67, right hemisphere
65.8
2609
Male, age 75, right hemisphere
59.8
Central amygdala nTPM: 80.5
1905
Male, age 76, both hemispheres
129.8
2826
Female, age 94, left hemisphere
88.6
2239
Male, age 80, left hemisphere
69.8
2701
Female, age 91, right hemisphere
58.7
2515
Male, age 75, right hemisphere
55.9
Corticomedial amygdala nTPM: 92.8
2429
Female, age 94, left hemisphere
124.2
2240
Male, age 76, both hemispheres
123.7
2829
Male, age 80, left hemisphere
97.6
2535
Female, age 67, right hemisphere
76.0
2428
Male, age 75, right hemisphere
71.2
2242
Female, age 91, right hemisphere
64.2
Lateral amygdala nTPM: 83.3
2534
Female, age 94, left hemisphere
131.5
1883
Male, age 76, both hemispheres
114.9
2256
Male, age 80, left hemisphere
81.6
2830
Female, age 67, right hemisphere
57.6
2516
Male, age 75, right hemisphere
57.2
2255
Female, age 91, right hemisphere
57.0
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
46.4
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 46.4
Samples: 152
Max nTPM: 174.6
Min nTPM: 6.5
Std nTPM: 33.0
Median nTPM: 36.8
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
174.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
165.9
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
162.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
156.0
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
122.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
121.2
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
107.2
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
105.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
103.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
102.4
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
100.6
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
98.1
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
95.4
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
95.1
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
92.7
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
91.3
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
89.8
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
88.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
85.7
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
85.1
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
84.6
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
83.7
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
82.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
82.1
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
80.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
76.6
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
76.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
75.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
73.5
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
73.2
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
70.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
68.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
67.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
66.9
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
65.1
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
62.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
62.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
61.5
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
61.2
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
61.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
60.9
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
60.8
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
60.6
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
57.6
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
57.4
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
55.4
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
55.3
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
54.0
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
52.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
51.5
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
49.9
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
48.8
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
48.2
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
48.1
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
48.0
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
47.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
47.0
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
45.7
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
45.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
43.9
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
43.3
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
43.1
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
42.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
41.9
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
40.8
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
40.5
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
39.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
39.3
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
38.9
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
38.8
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
38.6
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
38.0
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
37.9
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
37.1
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
37.0
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
36.8
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
36.8
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
36.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
35.1
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
34.8
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
34.5
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
34.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
33.3
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
32.8
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
32.7
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
32.6
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
31.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
31.8
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
30.8
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
29.6
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
28.9
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
28.6
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
28.3
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
28.3
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
28.1
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
27.7
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
27.7
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
27.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
27.1
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
26.8
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
26.7
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
25.2
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
24.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
24.1
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
23.7
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
23.4
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
23.3
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
22.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
22.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
22.5
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
22.4
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
21.8
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
21.6
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
21.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
21.3
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
20.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
20.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
20.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
20.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
20.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
19.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
19.6
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
19.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
18.7
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
18.6
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
18.4
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
18.2
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
18.1
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
17.9
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
17.8
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
17.8
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
17.6
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
17.5
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
17.1
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
17.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
17.0
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
16.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
16.7
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
16.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
16.0
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
14.9
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
14.9
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
14.9
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
14.6
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
14.4
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
14.0
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
13.8
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
13.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
12.9
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
10.5
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
8.5
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
6.5
Show allShow less
AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
249.5
Mouse sample
Sample description
nTPM
Amygdala nTPM: 249.6
Samples: 4
Max nTPM: 261.3
Min nTPM: 236.3
Sample A
Male
261.3
Sample B
Male
236.3
Sample C
Female
259.5
Sample D
Female
241.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.