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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
78.9
nTPM
Monaco:
33.0
nTPM
Schmiedel:
27.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
78.9
HPA sample
nTPM
gdT-cell nTPM: 46.5
Samples: 6
Max nTPM: 50.8
Min nTPM: 36.5
P10809_1007
36.5
P10809_1022
50.8
P10809_1041
50.8
P10809_1060
44.4
P10809_1077
46.7
P10809_1098
49.9
MAIT T-cell nTPM: 51.6
Samples: 6
Max nTPM: 76.8
Min nTPM: 34.1
P10809_1006
34.1
P10809_1024
76.8
P10809_1043
51.5
P10809_1062
46.4
P10809_1083
41.0
P10809_1097
59.6
Memory CD4 T-cell nTPM: 55.1
Samples: 6
Max nTPM: 62.7
Min nTPM: 46.9
P10809_1014
46.9
P10809_1026
62.7
P10809_1045
53.0
P10809_1064
55.4
P10809_1086
54.3
P10809_1113
58.2
Memory CD8 T-cell nTPM: 50.8
Samples: 5
Max nTPM: 58.5
Min nTPM: 30.4
P10809_1012
30.4
P10809_1027
51.8
P10809_1046
56.0
P10809_1065
58.5
P10809_1111
57.3
Naive CD4 T-cell nTPM: 48.6
Samples: 6
Max nTPM: 62.6
Min nTPM: 36.8
P10809_1015
41.1
P10809_1030
36.8
P10809_1049
62.6
P10809_1068
49.1
P10809_1085
54.9
P10809_1112
46.8
Naive CD8 T-cell nTPM: 47.5
Samples: 6
Max nTPM: 56.2
Min nTPM: 31.7
P10809_1016
31.7
P10809_1031
43.3
P10809_1050
51.8
P10809_1069
56.2
P10809_1087
49.5
P10809_1110
52.2
T-reg nTPM: 78.9
Samples: 6
Max nTPM: 119.1
Min nTPM: 46.2
P10809_1018
46.2
P10809_1037
119.1
P10809_1056
56.8
P10809_1075
51.7
P10809_1094
91.7
P10809_1106
107.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.0
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 29.7
Samples: 4
Max nTPM: 44.7
Min nTPM: 21.8
RHH5202_R3573
21.8
RHH5230_R3602
28.6
RHH5259_R3631
23.5
RHH5288_R3660
44.7
Effector memory CD8 T-cell nTPM: 26.9
Samples: 4
Max nTPM: 31.3
Min nTPM: 24.0
RHH5203_R3574
28.1
RHH5231_R3603
24.0
RHH5260_R3632
31.3
RHH5289_R3661
24.0
MAIT T-cell nTPM: 28.1
Samples: 4
Max nTPM: 35.4
Min nTPM: 24.3
RHH5233_R3605
24.3
RHH5205_R3576
24.8
RHH5262_R3634
35.4
RHH5297_R3663
27.9
Memory CD4 T-cell TFH nTPM: 32.9
Samples: 4
Max nTPM: 50.6
Min nTPM: 26.2
RHH5300_R3666
26.2
RHH5236_R3608
50.6
RHH5265_R3637
26.7
RHH5208_R3579
28.2
Memory CD4 T-cell Th1 nTPM: 30.0
Samples: 4
Max nTPM: 40.2
Min nTPM: 23.1
RHH5210_R3581
23.1
RHH5302_R3668
40.2
RHH5238_R3610
31.6
RHH5267_R3639
25.1
Memory CD4 T-cell Th1/Th17 nTPM: 24.6
Samples: 4
Max nTPM: 31.6
Min nTPM: 18.3
RHH5303_R3669
26.7
RHH5211_R3582
21.8
RHH5239_R3611
18.3
RHH5268_R3640
31.6
Memory CD4 T-cell Th17 nTPM: 19.7
Samples: 4
Max nTPM: 25.7
Min nTPM: 11.4
RHH5304_R3670
20.9
RHH5212_R3583
11.4
RHH5240_R3612
20.9
RHH5269_R3641
25.7
Memory CD4 T-cell Th2 nTPM: 32.2
Samples: 4
Max nTPM: 49.5
Min nTPM: 24.5
RHH5305_R3671
28.1
RHH5213_R3584
26.5
RHH5241_R3613
49.5
RHH5270_R3642
24.5
Naive CD4 T-cell nTPM: 31.4
Samples: 4
Max nTPM: 39.0
Min nTPM: 26.4
RHH5306_R3672
30.4
RHH5214_R3585
39.0
RHH5242_R3614
26.4
RHH5271_R3643
29.6
Naive CD8 T-cell nTPM: 28.0
Samples: 4
Max nTPM: 34.8
Min nTPM: 21.1
RHH5201_R3572
26.0
RHH5229_R3601
21.1
RHH5258_R3630
34.8
RHH5287_R3659
29.9
Non-Vd2 gdTCR nTPM: 27.0
Samples: 4
Max nTPM: 35.6
Min nTPM: 21.2
RHH5235_R3607
21.2
RHH5264_R3636
35.6
RHH5207_R3578
22.7
RHH5299_R3665
28.4
T-reg nTPM: 27.9
Samples: 4
Max nTPM: 30.7
Min nTPM: 24.3
RHH5301_R3667
24.3
RHH5237_R3609
30.7
RHH5266_R3638
30.1
RHH5209_R3580
26.3
Terminal effector memory CD4 T-cell nTPM: 25.7
Samples: 2
Max nTPM: 27.7
Min nTPM: 23.7
RHH5243_R3615
27.7
RHH5272_R3644
23.7
Terminal effector memory CD8 T-cell nTPM: 33.0
Samples: 4
Max nTPM: 43.1
Min nTPM: 26.9
RHH5232_R3604
32.2
RHH5204_R3575
43.1
RHH5261_R3633
26.9
RHH5296_R3662
29.8
Vd2 gdTCR nTPM: 29.7
Samples: 4
Max nTPM: 39.2
Min nTPM: 23.7
RHH5234_R3606
23.7
RHH5206_R3577
39.2
RHH5263_R3635
28.3
RHH5298_R3664
27.7
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
