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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
263.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 100.0
1984
Male, age 76, both hemispheres
134.0
2301
Female, age 85, both hemispheres
101.9
2188
Female, age 91, both hemispheres
100.3
2090
Male, age 80, both hemispheres
63.8
Dorsal cochlear nucleus nTPM: 85.9
2370
Male, age 61, both hemispheres
97.2
2187
Female, age 91, both hemispheres
96.6
2058
Male, age 76, both hemispheres
88.6
2378
Male, age 80, both hemispheres
73.8
2802
Male, age 74, right hemisphere
73.1
Dorsal tegmental nucleus nTPM: 91.2
2083
Male, age 80, both hemispheres
116.4
1936
Male, age 76, left hemisphere
104.6
2358
Male, age 61, both hemispheres
77.7
2326
Male, age 74, both hemispheres
65.9
Dorsolateral tegmental area nTPM: 90.5
2141
Male, age 76, both hemispheres
118.9
2654
Male, age 80, both hemispheres
116.1
2751
Female, age 85, both hemispheres
114.6
2360
Male, age 74, both hemispheres
72.7
2337
Male, age 61, both hemispheres
30.0
Kolliker-Fuse nucleus nTPM: 88.4
2793
Female, age 91, left hemisphere
111.0
2163
Male, age 80, both hemispheres
90.6
2315
Male, age 76, right hemisphere
63.6
Lateral lemniscal nuclei nTPM: 205.7
2453
Male, age 74, right hemisphere
290.5
2169
Male, age 76, both hemispheres
253.8
2036
Male, age 80, both hemispheres
189.2
2746
Female, age 85, left hemisphere
166.1
2320
Female, age 91, left hemisphere
128.7
Lateral parabrachial nucleus nTPM: 109.5
2139
Female, age 85, right hemisphere
196.1
2013
Male, age 80, both hemispheres
114.4
2790
Male, age 61, both hemispheres
89.4
2792
Male, age 76, both hemispheres
38.1
Lateral vestibular nucleus nTPM: 94.8
2184
Male, age 76, both hemispheres
95.3
2311
Male, age 80, both hemispheres
94.3
Locus coeruleus nTPM: 187.2
2123
Female, age 91, both hemispheres
338.7
2720
Male, age 74, both hemispheres
278.1
1980
Male, age 76, both hemispheres
159.1
2014
Male, age 55, unknown
148.7
2162
Male, age 80, both hemispheres
142.1
2317
Female, age 72, unknown
128.6
2788
Male, age 74, unknown
115.2
Medial parabrachial nucleus nTPM: 117.2
2854
Male, age 80, both hemispheres
146.9
2170
Female, age 91, both hemispheres
127.7
2786
Male, age 76, both hemispheres
109.3
2156
Male, age 61, both hemispheres
102.3
2463
Female, age 85, right hemisphere
99.9
Medial periolivary nuclei nTPM: 172.1
2171
Female, age 85, both hemispheres
272.3
2063
Male, age 76, both hemispheres
246.2
2791
Male, age 74, right hemisphere
164.2
2458
Female, age 91, both hemispheres
93.5
2081
Male, age 80, both hemispheres
84.5
Motor facial nucleus nTPM: 181.9
2062
Male, age 76, both hemispheres
270.7
2365
Male, age 74, right hemisphere
235.2
2327
Male, age 80, both hemispheres
181.6
2697
Female, age 85, both hemispheres
153.8
2126
Male, age 61, both hemispheres
138.0
2795
Female, age 91, both hemispheres
112.2
Motor trigeminal nucleus nTPM: 132.8
2079
Male, age 80, both hemispheres
168.1
2560
Male, age 74, both hemispheres
158.9
2335
Male, age 61, both hemispheres
127.7
2309
Male, age 76, both hemispheres
112.4
2321
Female, age 91, both hemispheres
96.6
Nuclei of the trapezoid body nTPM: 240.3
2159
Male, age 61, both hemispheres
431.9
2735
Female, age 85, both hemispheres
264.2
1983
Male, age 76, both hemispheres
239.1
2166
Male, age 80, both hemispheres
151.8
2368
Female, age 91, both hemispheres
114.7
Nucleus raphe magnus nTPM: 263.0
2160
Male, age 61, both hemispheres
411.9
2455
Male, age 74, both hemispheres
396.5
2172
Female, age 85, both hemispheres
283.9
2328
Male, age 80, both hemispheres
177.6
2051
Male, age 76, both hemispheres
172.0
2459
Female, age 91, both hemispheres
136.4
Paramedian reticular nucleus nTPM: 164.1
2050
Female, age 85, both hemispheres
207.4
2313
Male, age 61, both hemispheres
196.2
2057
Male, age 80, both hemispheres
158.0
2052
Male, age 76, both hemispheres
95.0
Pedunculopontine tegmental nucleus nTPM: 112.3
1921
Female, age 85, both hemispheres
128.5
2334
Male, age 80, both hemispheres
116.4
2338
Male, age 61, both hemispheres
91.8
Pontine nuclei nTPM: 230.1
2727
Male, age 61, right hemisphere
357.1
2109
Female, age 72, unknown
278.4
1863
Male, age 55, unknown
268.1
2787
Female, age 85, both hemispheres
266.5
1968
Male, age 76, left hemisphere
240.3
2454
Male, age 74, left hemisphere
216.1
2115
Male, age 80, left hemisphere
113.3
2319
Female, age 91, both hemispheres
101.3
Pontine raphe nucleus nTPM: 155.6
2122
Female, age 85, midline
203.7
2853
Male, age 76, midline
107.5
Posteroventral cochlear nucleus nTPM: 87.4
2752
Female, age 85, both hemispheres
168.2
2070
Male, age 76, both hemispheres
121.6
2371
Male, age 61, both hemispheres
71.4
2341
Male, age 80, both hemispheres
70.0
2135
Female, age 91, both hemispheres
5.6
Principal sensory trigeminal nucleus nTPM: 189.4
2158
Male, age 61, both hemispheres
359.9
2008
Male, age 80, left hemisphere
208.1
2367
Female, age 91, left hemisphere
99.9
2324
Male, age 76, both hemispheres
89.8
Reticular pontine nucleus, caudal nTPM: 143.9
2332
Male, age 80, right hemisphere
219.9
2092
Male, age 76, both hemispheres
168.7
2457
Female, age 91, both hemispheres
104.7
2559
Male, age 74, both hemispheres
82.3
Reticular pontine nucleus, oral nTPM: 146.2
2361
Male, age 74, both hemispheres
217.4
2012
Female, age 85, both hemispheres
179.5
1939
Male, age 80, both hemispheres
127.9
2167
Male, age 76, both hemispheres
115.4
2366
Female, age 91, both hemispheres
90.8
Reticulotegmental nucleus nTPM: 132.2
2325
Male, age 76, both hemispheres
178.1
2452
Male, age 74, both hemispheres
132.6
2333
Male, age 80, both hemispheres
117.7
2322
Female, age 91, both hemispheres
100.3
Spinal trigeminal nucleus, oral nTPM: 105.6
2737
Female, age 85, both hemispheres
125.3
2164
Male, age 80, both hemispheres
97.7
1978
Male, age 76, both hemispheres
93.8
Subcoeruleus area nTPM: 136.1
2323
Female, age 91, left hemisphere
186.5
2089
Male, age 76, left hemisphere
163.1
1958
Male, age 80, both hemispheres
158.9
2451
Male, age 74, both hemispheres
93.4
2369
Female, age 85, left hemisphere
78.6
Superior olive nTPM: 175.0
1875
Female, age 85, both hemispheres
239.7
2364
Male, age 74, right hemisphere
198.5
2020
Male, age 76, both hemispheres
153.9
2329
Male, age 80, right hemisphere
153.0
2561
Female, age 91, both hemispheres
129.8
Ventral periolivary nuclei nTPM: 181.8
2165
Male, age 80, both hemispheres
219.1
2130
Female, age 85, both hemispheres
216.9
2794
Female, age 91, left hemisphere
155.6
2023
Male, age 76, both hemispheres
135.4
Ventrolateral tegmental area, A5 NE cell group nTPM: 164.2
2449
Male, age 74, both hemispheres
340.7
1959
Male, age 76, both hemispheres
173.6
2840
Female, age 85, both hemispheres
171.0
2161
Male, age 80, both hemispheres
140.0
2359
Male, age 61, both hemispheres
89.3
2456
Female, age 91, both hemispheres
70.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
221.1
Pig sample
Sample description
nTPM
Pons nTPM: 221.1
Samples: 4
Max nTPM: 288.9
Min nTPM: 167.5
Sample A
Female
229.3
Sample B
Female
167.5
Sample C
Male
198.7
Sample D
Male
288.9
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.