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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
297.6
nTPM
HPA Brain:
513.2
nTPM
GTEx:
297.6
nTPM
FANTOM5:
538.3
Scaled Tags Per Million
Pig:
175.2
nTPM
Mouse:
128.1
nTPM
Allen mouse:
6.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
513.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 409.8
2019
Male, age 18, unknown
548.7
2411
Female, age 72, unknown
502.8
1870
Female, age 42, unknown
498.4
1830
Male, age 51, unknown
493.7
1833
Male, age 53, unknown
447.9
2828
Female, age 72, unknown
412.0
2586
Male, age 75, left hemisphere
369.4
1827
Male, age 72, unknown
295.5
2219
Male, age 76, both hemispheres
265.4
2666
Male, age 74, left hemisphere
264.2
Dorsal raphe nucleus nTPM: 324.0
2750
Male, age 76, both hemispheres
484.7
2016
Female, age 72, unknown
338.8
1828
Male, age 53, unknown
317.5
2047
Male, age 72, unknown
241.2
2298
Female, age 72, unknown
237.6
Inferior colliculus nTPM: 270.7
1890
Male, age 53, unknown
309.2
1848
Female, age 42, unknown
292.3
2097
Female, age 72, unknown
242.9
2849
Male, age 72, unknown
238.2
Median raphe nucleus nTPM: 337.1
2220
Male, age 76, midline
337.1
Periaquaductal grey, anterior nTPM: 276.3
2502
Female, age 75, unknown
311.4
1795
Male, age 51, unknown
265.1
1947
Male, age 18, unknown
252.4
Periaquaductal grey, dorsal nTPM: 265.5
2850
Male, age 76, both hemispheres
338.9
2464
Female, age 72, unknown
294.2
1831
Male, age 72, unknown
261.4
1840
Male, age 53, unknown
167.5
Periaquaductal grey, lateral nTPM: 345.2
2140
Male, age 76, both hemispheres
399.7
2272
Male, age 74, both hemispheres
335.3
2053
Male, age 18, unknown
300.7
Pretectal area nTPM: 300.6
2316
Male, age 76, right hemisphere
407.5
2273
Male, age 74, both hemispheres
400.7
2667
Female, age 75, unknown
356.1
1815
Male, age 53, unknown
346.1
2407
Male, age 75, both hemispheres
319.8
1817
Female, age 42, unknown
304.2
2007
Male, age 72, unknown
280.4
2825
Male, age 18, unknown
280.2
2224
Female, age 72, unknown
255.8
1944
Female, age 72, unknown
192.2
1816
Male, age 51, unknown
163.6
Red nucleus nTPM: 513.2
1904
Male, age 53, unknown
624.0
2769
Male, age 72, unknown
622.1
1865
Male, age 51, unknown
619.0
2227
Male, age 72, unknown
616.4
2785
Male, age 18, unknown
596.2
1954
Female, age 42, unknown
566.7
1821
Female, age 72, unknown
544.1
2503
Female, age 72, unknown
494.3
2823
Male, age 76, right hemisphere
468.9
2588
Male, age 74, left hemisphere
347.9
2584
Male, age 75, left hemisphere
338.8
2725
Female, age 75, unknown
319.6
Substantia nigra nTPM: 337.6
1851
Male, age 51, unknown
426.9
2583
Male, age 75, right hemisphere
411.2
2590
Female, age 75, unknown
392.7
2409
Female, age 72, unknown
387.3
2699
Male, age 18, unknown
365.5
1916
Female, age 42, unknown
304.8
1889
Female, age 72, unknown
296.9
1941
Male, age 53, unknown
284.1
2241
Male, age 72, unknown
266.2
2665
Male, age 74, both hemispheres
240.1
Superior colliculus nTPM: 322.8
1995
Male, age 72, unknown
503.5
1913
Female, age 42, unknown
462.9
2587
Male, age 74, left hemisphere
371.7
1839
Male, age 51, unknown
322.2
2668
Female, age 75, unknown
296.0
1796
Male, age 53, unknown
294.0
2664
Male, age 75, both hemispheres
257.4
1895
Male, age 76, right hemisphere
255.5
2087
Female, age 72, unknown
244.8
2261
Male, age 18, unknown
220.0
Ventral tegmental area nTPM: 411.3
2223
Female, age 72, unknown
585.1
2410
Female, age 72, unknown
434.7
2021
Male, age 53, unknown
389.5
1942
Male, age 51, unknown
361.2
1915
Female, age 42, unknown
354.6
2218
Male, age 76, both hemispheres
343.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
297.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 297.6
Samples: 139
Max nTPM: 860.2
Min nTPM: 92.1
Std nTPM: 116.5
Median nTPM: 266.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
860.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
731.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
639.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
614.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
577.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
562.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
532.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
531.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
514.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
474.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
466.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
465.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
464.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
456.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
455.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
443.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
437.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
435.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
406.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
398.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
396.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
388.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
375.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
375.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
368.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
367.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
364.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
360.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
360.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
354.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
351.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
345.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
345.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
344.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
342.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
338.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
336.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
335.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
331.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
331.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
327.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
325.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
322.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
322.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
314.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
314.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
310.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
306.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
305.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
305.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
304.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
300.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
300.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
300.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
299.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
297.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
294.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
291.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
289.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
279.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
279.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
276.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
274.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
272.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
271.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
269.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
268.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
266.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
266.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
266.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
262.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
260.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
259.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
259.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
259.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
257.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
256.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
253.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
252.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
251.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
251.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
250.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
249.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
246.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
246.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
246.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
245.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
245.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
244.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
243.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
243.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
242.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
239.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
236.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
234.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
231.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
231.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
230.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
229.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
228.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
227.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
226.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
223.9
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
220.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
218.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
217.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
215.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
214.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
214.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
213.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
213.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
212.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
209.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
209.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
208.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
207.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
206.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
203.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
202.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
201.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
200.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
199.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
197.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
193.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
192.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
187.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
186.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
185.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
185.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
184.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
183.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
180.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
177.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
171.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
168.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
158.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
142.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
124.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
92.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
128.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 128.1
Samples: 4
Max nTPM: 149.9
Min nTPM: 108.8
Sample A
Male
118.2
Sample B
Male
108.8
Sample C
Female
135.4
Sample D
Female
149.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.