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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
196.5
nTPM
HPA Brain:
260.2
nTPM
GTEx:
196.5
nTPM
FANTOM5:
181.0
Scaled Tags Per Million
Pig:
60.5
nTPM
Mouse:
105.2
nTPM
Allen mouse:
3.6
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA054026
Antibody CAB010823
Antibody CAB016728
Antibody CAB036009
Glial cells
Low
Medium
High
Medium
Neuronal cells
Medium
Not detected
Not detected
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
260.2
Sample id
Sample description
nTPM
Hippocampus nTPM: 230.9
2529
Female, age 94, left hemisphere
302.2
1911
Female, age 85, right hemisphere
242.4
1898
Male, age 80, left hemisphere
235.8
1855
Male, age 76, left hemisphere
224.6
2148
Female, age 91, left hemisphere
198.9
2621
Female, age 67, right hemisphere
181.6
Dentate gyrus nTPM: 212.2
2528
Male, age 74, both hemispheres
295.3
2010
Male, age 76, both hemispheres
270.8
2530
Female, age 94, left hemisphere
250.6
2246
Female, age 85, both hemispheres
178.5
2531
Female, age 67, both hemispheres
141.4
1927
Female, age 91, both hemispheres
136.7
Entorhinal gyrus nTPM: 197.6
2117
Female, age 91, right hemisphere
340.2
2764
Male, age 80, right hemisphere
216.7
1787
Male, age 76, left hemisphere
183.2
1938
Female, age 85, left hemisphere
171.5
2613
Female, age 94, left hemisphere
144.3
2686
Male, age 75, right hemisphere
129.7
Hippocampus, CA1 nTPM: 193.1
2082
Female, age 91, right hemisphere
229.0
2527
Male, age 74, both hemispheres
223.2
1873
Female, age 85, both hemispheres
208.5
2045
Male, age 76, both hemispheres
158.4
2749
Male, age 80, left hemisphere
146.5
Hippocampus, CA2 nTPM: 226.6
2249
Male, age 74, both hemispheres
289.8
2113
Female, age 91, right hemisphere
251.4
1963
Male, age 80, left hemisphere
240.9
1940
Female, age 85, left hemisphere
227.4
2437
Female, age 94, left hemisphere
210.5
1892
Male, age 76, both hemispheres
139.7
Hippocampus, CA3 nTPM: 177.3
1891
Female, age 85, both hemispheres
247.1
2436
Male, age 74, both hemispheres
210.4
1867
Male, age 76, both hemispheres
203.8
2137
Male, age 80, left hemisphere
146.8
2620
Female, age 94, left hemisphere
143.6
2861
Female, age 67, both hemispheres
112.3
Parahippocampal cortex nTPM: 160.3
2018
Male, age 76, both hemispheres
221.7
1990
Female, age 91, right hemisphere
196.1
2532
Female, age 72, left hemisphere
185.0
2692
Male, age 74, both hemispheres
183.2
2245
Female, age 91, both hemispheres
158.2
1933
Female, age 85, both hemispheres
147.8
2250
Female, age 67, right hemisphere
147.2
1850
Male, age 80, both hemispheres
145.7
2693
Female, age 94, both hemispheres
117.3
2622
Female, age 67, right hemisphere
101.1
Perirhinal gyrus nTPM: 127.5
2521
Female, age 94, right hemisphere
158.3
1794
Male, age 80, right hemisphere
135.5
1847
Female, age 91, left hemisphere
131.1
2848
Male, age 76, right hemisphere
109.1
1841
Female, age 85, right hemisphere
103.2
Subiculum nTPM: 260.2
2042
Male, age 76, both hemispheres
331.0
2729
Female, age 91, right hemisphere
291.6
1901
Male, age 80, both hemispheres
266.0
2619
Male, age 74, both hemispheres
243.4
1977
Female, age 85, both hemispheres
220.4
2438
Female, age 94, left hemisphere
208.8
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
196.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 196.5
Samples: 197
Max nTPM: 564.8
Min nTPM: 60.7
Std nTPM: 92.2
Median nTPM: 175.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
564.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
527.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
525.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
520.3
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
433.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
413.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
400.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
400.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
397.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
397.3
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
373.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
351.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
350.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
349.9
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
344.3
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
341.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
340.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
338.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
324.5
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
324.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
318.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
299.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
295.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
293.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
292.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
290.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
289.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
280.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
278.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
278.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
275.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
268.3
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
265.8
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
265.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
264.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
263.6
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
262.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
262.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
261.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
261.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
260.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
259.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
258.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
257.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
256.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
252.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
252.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
250.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
248.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
247.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
246.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
246.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
242.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
239.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
234.2
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
229.8
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
229.2
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
228.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
228.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
226.8
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
221.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
220.5
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
220.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
217.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
217.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
216.9
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
214.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
214.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
213.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
213.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
201.6
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
200.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
200.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
199.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
197.9
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
197.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
195.8
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
195.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
195.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
193.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
192.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
191.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
189.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
188.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
188.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
187.6
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
185.4
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
184.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
182.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
181.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
180.9
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
180.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
179.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
178.9
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
178.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
178.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
177.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
177.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
175.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
174.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
172.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
171.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
170.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
170.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
169.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
168.3
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
167.5
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
166.9
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
166.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
165.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
162.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
162.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
159.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
159.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
158.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
157.8
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
156.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
156.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
156.0
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
155.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
155.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
153.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
152.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
152.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
152.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
151.6
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
149.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
148.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
148.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
148.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
147.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
147.2
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
147.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
146.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
146.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
145.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
144.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
144.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
142.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
139.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
139.5
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
138.5
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
138.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
138.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
136.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
136.2
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
136.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
136.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
132.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
132.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
130.4
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
129.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
129.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
126.3
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
126.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
125.1
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
124.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
123.3
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
122.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
122.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
122.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
121.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
121.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
120.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
119.8
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
118.6
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
118.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
116.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
111.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
110.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
102.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
101.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
101.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
100.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
100.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
99.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
99.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
98.1
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
96.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
96.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
96.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
94.0
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
93.9
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
88.3
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
87.3
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
86.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
85.3
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
84.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
83.1
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
82.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
82.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
77.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
77.2
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
76.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
69.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
67.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
60.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
105.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 60.5
Samples: 4
Max nTPM: 71.3
Min nTPM: 44.5
Sample A
Male
71.3
Sample B
Male
58.3
Sample C
Female
67.8
Sample D
Female
44.5
Hippocampal formation nTPM: 105.2
Samples: 4
Max nTPM: 160.7
Min nTPM: 64.2
Sample A
Male
64.2
Sample B
Male
76.9
Sample C
Female
160.7
Sample D
Female
118.9
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.