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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
11.4
nTPM
HPA Brain:
25.5
nTPM
GTEx:
11.4
nTPM
FANTOM5:
15.6
Scaled Tags Per Million
Pig:
19.1
nTPM
Mouse:
28.0
nTPM
Allen mouse:
8.8
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
25.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 19.9
2666
Male, age 74, left hemisphere
27.1
2586
Male, age 75, left hemisphere
22.9
2019
Male, age 18, unknown
22.3
2219
Male, age 76, both hemispheres
22.1
1827
Male, age 72, unknown
21.3
2828
Female, age 72, unknown
19.8
2411
Female, age 72, unknown
19.1
1833
Male, age 53, unknown
15.4
1870
Female, age 42, unknown
15.4
1830
Male, age 51, unknown
13.9
Dorsal raphe nucleus nTPM: 19.7
1828
Male, age 53, unknown
22.9
2047
Male, age 72, unknown
22.1
2298
Female, age 72, unknown
20.8
2750
Male, age 76, both hemispheres
17.6
2016
Female, age 72, unknown
15.0
Inferior colliculus nTPM: 15.3
1890
Male, age 53, unknown
17.3
2097
Female, age 72, unknown
16.8
1848
Female, age 42, unknown
14.1
2849
Male, age 72, unknown
12.9
Median raphe nucleus nTPM: 21.7
2220
Male, age 76, midline
21.7
Periaquaductal grey, anterior nTPM: 19.6
1795
Male, age 51, unknown
22.3
1947
Male, age 18, unknown
19.8
2502
Female, age 75, unknown
16.8
Periaquaductal grey, dorsal nTPM: 15.7
1831
Male, age 72, unknown
19.7
1840
Male, age 53, unknown
15.3
2464
Female, age 72, unknown
14.4
2850
Male, age 76, both hemispheres
13.3
Periaquaductal grey, lateral nTPM: 14.5
2272
Male, age 74, both hemispheres
15.8
2053
Male, age 18, unknown
15.2
2140
Male, age 76, both hemispheres
12.6
Pretectal area nTPM: 21.8
1816
Male, age 51, unknown
32.0
1944
Female, age 72, unknown
28.8
2007
Male, age 72, unknown
28.6
1817
Female, age 42, unknown
25.9
2667
Female, age 75, unknown
22.2
1815
Male, age 53, unknown
22.0
2407
Male, age 75, both hemispheres
18.9
2224
Female, age 72, unknown
17.5
2316
Male, age 76, right hemisphere
15.2
2825
Male, age 18, unknown
15.2
2273
Male, age 74, both hemispheres
13.8
Red nucleus nTPM: 17.4
2785
Male, age 18, unknown
21.6
2584
Male, age 75, left hemisphere
21.3
1821
Female, age 72, unknown
18.1
2588
Male, age 74, left hemisphere
18.1
2725
Female, age 75, unknown
17.4
1904
Male, age 53, unknown
16.7
1954
Female, age 42, unknown
16.5
2769
Male, age 72, unknown
16.5
2823
Male, age 76, right hemisphere
16.4
2503
Female, age 72, unknown
15.8
1865
Male, age 51, unknown
15.6
2227
Male, age 72, unknown
14.8
Substantia nigra nTPM: 25.5
1916
Female, age 42, unknown
37.0
1851
Male, age 51, unknown
30.6
2665
Male, age 74, both hemispheres
29.5
1889
Female, age 72, unknown
25.6
1941
Male, age 53, unknown
25.0
2409
Female, age 72, unknown
24.6
2583
Male, age 75, right hemisphere
23.2
2241
Male, age 72, unknown
21.6
2699
Male, age 18, unknown
20.3
2590
Female, age 75, unknown
17.3
Superior colliculus nTPM: 19.6
2668
Female, age 75, unknown
29.8
2087
Female, age 72, unknown
26.7
2664
Male, age 75, both hemispheres
21.7
2261
Male, age 18, unknown
21.2
1796
Male, age 53, unknown
20.5
2587
Male, age 74, left hemisphere
16.4
1895
Male, age 76, right hemisphere
15.2
1913
Female, age 42, unknown
14.9
1995
Male, age 72, unknown
14.7
1839
Male, age 51, unknown
14.5
Ventral tegmental area nTPM: 21.3
2218
Male, age 76, both hemispheres
26.5
1915
Female, age 42, unknown
24.8
2410
Female, age 72, unknown
23.3
1942
Male, age 51, unknown
19.8
2021
Male, age 53, unknown
18.1
2223
Female, age 72, unknown
15.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 11.4
Samples: 139
Max nTPM: 31.8
Min nTPM: 1.2
Std nTPM: 6.3
Median nTPM: 9.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
31.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
31.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
27.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
26.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
26.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
25.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
25.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
24.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
22.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
21.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
21.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
20.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
20.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
19.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
19.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
19.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
19.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
18.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
18.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
18.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
18.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
17.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
16.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
16.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
16.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
16.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
16.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
16.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
16.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
16.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
16.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
15.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
15.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
15.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
15.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
15.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
15.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
14.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
14.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
14.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
14.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
14.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
14.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
14.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
14.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
14.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
13.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
13.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
12.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
12.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
12.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
12.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
12.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
12.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
12.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
12.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
11.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
11.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
11.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
11.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
11.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
11.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
10.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
10.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
10.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
10.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
10.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
9.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
9.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
9.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
9.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
9.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
9.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
9.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
9.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
9.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
8.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
8.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
8.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
8.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
8.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
8.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
8.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
8.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
8.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
7.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
7.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
7.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
7.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
7.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
7.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
7.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
7.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
7.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
7.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
7.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
6.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
6.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
6.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
6.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
6.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
6.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
6.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
6.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
6.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
6.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
6.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
6.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
6.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
6.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
6.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
6.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
5.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
5.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
5.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
5.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
5.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
5.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
5.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
4.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
4.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
4.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
4.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
4.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
4.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
4.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
4.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
4.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
4.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
4.2
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
4.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
4.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
3.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
3.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
3.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
3.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
3.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
3.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
28.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 28.0
Samples: 4
Max nTPM: 29.2
Min nTPM: 27.1
Sample A
Male
28.3
Sample B
Male
27.1
Sample C
Female
27.2
Sample D
Female
29.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.