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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
473.8
nTPM
HPA Brain:
792.8
nTPM
GTEx:
473.8
nTPM
FANTOM5:
627.2
Scaled Tags Per Million
Pig:
387.0
nTPM
Mouse:
508.0
nTPM
Allen mouse:
27.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA071191
Antibody HPA074390
Glial cells
Medium
Not detected
Neuronal cells
High
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
792.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 680.2
2621
Female, age 67, right hemisphere
898.1
2148
Female, age 91, left hemisphere
689.4
1855
Male, age 76, left hemisphere
681.6
1898
Male, age 80, left hemisphere
641.8
1911
Female, age 85, right hemisphere
594.0
2529
Female, age 94, left hemisphere
576.6
Dentate gyrus nTPM: 657.0
2531
Female, age 67, both hemispheres
1052.9
1927
Female, age 91, both hemispheres
697.1
2010
Male, age 76, both hemispheres
682.3
2530
Female, age 94, left hemisphere
527.8
2528
Male, age 74, both hemispheres
508.6
2246
Female, age 85, both hemispheres
473.5
Entorhinal gyrus nTPM: 322.8
2613
Female, age 94, left hemisphere
443.0
2686
Male, age 75, right hemisphere
328.4
2117
Female, age 91, right hemisphere
317.4
1938
Female, age 85, left hemisphere
293.3
1787
Male, age 76, left hemisphere
278.1
2764
Male, age 80, right hemisphere
276.8
Hippocampus, CA1 nTPM: 725.0
2749
Male, age 80, left hemisphere
966.9
2045
Male, age 76, both hemispheres
793.0
2527
Male, age 74, both hemispheres
787.8
1873
Female, age 85, both hemispheres
549.4
2082
Female, age 91, right hemisphere
527.9
Hippocampus, CA2 nTPM: 571.8
1963
Male, age 80, left hemisphere
892.3
1892
Male, age 76, both hemispheres
624.5
2113
Female, age 91, right hemisphere
618.1
1940
Female, age 85, left hemisphere
452.3
2249
Male, age 74, both hemispheres
447.2
2437
Female, age 94, left hemisphere
396.5
Hippocampus, CA3 nTPM: 792.8
2620
Female, age 94, left hemisphere
1092.5
2137
Male, age 80, left hemisphere
1053.8
2861
Female, age 67, both hemispheres
1053.8
1867
Male, age 76, both hemispheres
664.4
2436
Male, age 74, both hemispheres
492.1
1891
Female, age 85, both hemispheres
400.6
Parahippocampal cortex nTPM: 406.6
2245
Female, age 91, both hemispheres
744.4
2693
Female, age 94, both hemispheres
502.9
2622
Female, age 67, right hemisphere
491.2
2018
Male, age 76, both hemispheres
440.2
2250
Female, age 67, right hemisphere
385.6
1850
Male, age 80, both hemispheres
358.2
1933
Female, age 85, both hemispheres
313.5
1990
Female, age 91, right hemisphere
308.0
2532
Female, age 72, left hemisphere
277.5
2692
Male, age 74, both hemispheres
244.0
Perirhinal gyrus nTPM: 446.7
2521
Female, age 94, right hemisphere
711.1
1794
Male, age 80, right hemisphere
473.9
1841
Female, age 85, right hemisphere
404.9
1847
Female, age 91, left hemisphere
397.0
2848
Male, age 76, right hemisphere
246.7
Subiculum nTPM: 375.5
2729
Female, age 91, right hemisphere
518.9
1901
Male, age 80, both hemispheres
468.5
2042
Male, age 76, both hemispheres
415.9
1977
Female, age 85, both hemispheres
321.1
2619
Male, age 74, both hemispheres
280.3
2438
Female, age 94, left hemisphere
248.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
473.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 473.8
Samples: 197
Max nTPM: 1443.1
Min nTPM: 9.9
Std nTPM: 323.1
Median nTPM: 436.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
1443.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
1437.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
1413.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
1348.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
1322.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
1300.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
1248.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
1243.1
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
1199.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
1137.5
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
1134.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
1127.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
1108.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
1009.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
974.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
962.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
951.8
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
950.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
943.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
940.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
933.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
901.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
891.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
886.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
857.3
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
848.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
837.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
825.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
813.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
806.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
788.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
786.8
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
776.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
742.2
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
737.1
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
718.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
714.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
708.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
700.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
695.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
679.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
678.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
676.2
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
666.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
658.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
649.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
647.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
638.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
636.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
625.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
618.2
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
617.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
606.0
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
602.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
601.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
600.1
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
596.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
593.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
582.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
581.4
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
579.7
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
568.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
566.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
566.0
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
564.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
562.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
555.8
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
555.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
553.5
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
552.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
547.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
529.0
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
528.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
527.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
526.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
524.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
523.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
522.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
518.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
514.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
496.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
490.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
489.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
487.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
483.1
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
475.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
475.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
472.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
471.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
468.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
466.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
462.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
459.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
457.9
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
454.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
452.5
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
445.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
438.4
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
436.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
427.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
419.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
418.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
412.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
406.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
406.4
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
406.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
399.3
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
397.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
396.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
386.6
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
385.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
384.6
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
382.1
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
373.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
360.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
351.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
350.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
349.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
347.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
344.8
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
336.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
335.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
335.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
330.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
329.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
326.3
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
325.3
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
322.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
315.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
314.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
311.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
306.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
305.1
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
300.8
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
292.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
290.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
282.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
279.4
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
276.1
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
270.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
269.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
263.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
263.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
263.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
262.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
259.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
258.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
256.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
254.2
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
240.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
230.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
229.8
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
215.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
213.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
191.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
188.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
184.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
182.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
174.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
166.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
159.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
157.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
143.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
126.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
120.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
118.2
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
116.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
115.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
106.0
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
105.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
100.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
100.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
95.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
95.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
93.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
92.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
92.6
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
90.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
88.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
72.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
71.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
68.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
68.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
67.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
59.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
54.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
53.9
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
53.3
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
52.3
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
48.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
46.7
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
32.7
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
30.9
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
30.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
27.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
10.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
9.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
508.0
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 361.4
Samples: 4
Max nTPM: 376.2
Min nTPM: 337.2
Sample A
Male
376.2
Sample B
Male
337.2
Sample C
Female
367.4
Sample D
Female
364.6
Hippocampal formation nTPM: 508.0
Samples: 4
Max nTPM: 562.9
Min nTPM: 452.1
Sample A
Male
470.6
Sample B
Male
546.3
Sample C
Female
562.9
Sample D
Female
452.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.