We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
8.3
nTPM
HPA Brain:
65.1
nTPM
GTEx:
8.3
nTPM
FANTOM5:
105.4
Scaled Tags Per Million
Pig:
24.6
nTPM
Mouse:
9.8
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
65.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 52.0
1870
Female, age 42, unknown
59.9
1833
Male, age 53, unknown
58.9
2411
Female, age 72, unknown
58.8
2828
Female, age 72, unknown
57.1
2019
Male, age 18, unknown
56.3
1830
Male, age 51, unknown
55.7
1827
Male, age 72, unknown
48.6
2586
Male, age 75, left hemisphere
44.5
2219
Male, age 76, both hemispheres
40.2
2666
Male, age 74, left hemisphere
40.0
Dorsal raphe nucleus nTPM: 45.4
2750
Male, age 76, both hemispheres
55.7
2016
Female, age 72, unknown
45.9
1828
Male, age 53, unknown
45.0
2298
Female, age 72, unknown
40.2
2047
Male, age 72, unknown
40.0
Inferior colliculus nTPM: 43.5
1848
Female, age 42, unknown
46.1
1890
Male, age 53, unknown
46.1
2097
Female, age 72, unknown
42.2
2849
Male, age 72, unknown
39.5
Median raphe nucleus nTPM: 32.3
2220
Male, age 76, midline
32.3
Periaquaductal grey, anterior nTPM: 44.7
2502
Female, age 75, unknown
52.9
1947
Male, age 18, unknown
44.4
1795
Male, age 51, unknown
37.0
Periaquaductal grey, dorsal nTPM: 41.7
2464
Female, age 72, unknown
48.7
2850
Male, age 76, both hemispheres
43.5
1831
Male, age 72, unknown
40.3
1840
Male, age 53, unknown
34.4
Periaquaductal grey, lateral nTPM: 40.7
2140
Male, age 76, both hemispheres
46.7
2053
Male, age 18, unknown
45.1
2272
Male, age 74, both hemispheres
30.2
Pretectal area nTPM: 44.9
2667
Female, age 75, unknown
59.7
2316
Male, age 76, right hemisphere
57.5
1815
Male, age 53, unknown
49.3
1944
Female, age 72, unknown
44.1
1817
Female, age 42, unknown
43.3
2007
Male, age 72, unknown
41.2
2825
Male, age 18, unknown
41.1
2273
Male, age 74, both hemispheres
40.8
2224
Female, age 72, unknown
39.7
1816
Male, age 51, unknown
39.2
2407
Male, age 75, both hemispheres
37.5
Red nucleus nTPM: 65.1
1904
Male, age 53, unknown
78.3
1821
Female, age 72, unknown
74.9
2823
Male, age 76, right hemisphere
72.5
2503
Female, age 72, unknown
72.0
1865
Male, age 51, unknown
71.4
2769
Male, age 72, unknown
70.3
2227
Male, age 72, unknown
69.4
1954
Female, age 42, unknown
66.7
2785
Male, age 18, unknown
65.3
2588
Male, age 74, left hemisphere
53.8
2725
Female, age 75, unknown
48.8
2584
Male, age 75, left hemisphere
37.5
Substantia nigra nTPM: 42.3
2409
Female, age 72, unknown
59.2
1889
Female, age 72, unknown
48.5
1851
Male, age 51, unknown
47.8
2583
Male, age 75, right hemisphere
45.0
2699
Male, age 18, unknown
42.5
2590
Female, age 75, unknown
40.3
1916
Female, age 42, unknown
40.1
2241
Male, age 72, unknown
39.0
1941
Male, age 53, unknown
33.7
2665
Male, age 74, both hemispheres
27.0
Superior colliculus nTPM: 47.3
1913
Female, age 42, unknown
61.3
1995
Male, age 72, unknown
59.5
1895
Male, age 76, right hemisphere
58.0
1839
Male, age 51, unknown
48.7
2587
Male, age 74, left hemisphere
46.5
1796
Male, age 53, unknown
45.1
2087
Female, age 72, unknown
39.7
2668
Female, age 75, unknown
39.0
2261
Male, age 18, unknown
38.7
2664
Male, age 75, both hemispheres
36.0
Ventral tegmental area nTPM: 43.6
2410
Female, age 72, unknown
57.2
2223
Female, age 72, unknown
46.4
1942
Male, age 51, unknown
39.8
2021
Male, age 53, unknown
39.6
2218
Male, age 76, both hemispheres
39.4
1915
Female, age 42, unknown
39.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
8.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 8.3
Samples: 139
Max nTPM: 17.8
Min nTPM: 2.3
Std nTPM: 3.2
Median nTPM: 7.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
17.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
17.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
17.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
16.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
16.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
15.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
15.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
14.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
14.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
14.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
14.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
14.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
13.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
13.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
13.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
13.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
13.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
13.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
12.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
12.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
12.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
11.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
11.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
11.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
11.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
10.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
10.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
10.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
10.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
10.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
10.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
9.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
9.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
9.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
9.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
9.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
9.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
9.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
9.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
9.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
9.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
9.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
9.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
9.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
8.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
8.8
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
8.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
8.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
8.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
8.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
8.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
8.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
8.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
8.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
8.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
8.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
8.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
8.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
7.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
7.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
7.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
7.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
7.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
7.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
7.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
7.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
7.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
7.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
7.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
7.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
7.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
7.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
7.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
7.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
7.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
7.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
7.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
7.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
7.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
7.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
7.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
7.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
7.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
7.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
7.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
7.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
7.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
6.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
6.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
6.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
6.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
6.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
6.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
6.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
6.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
6.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
6.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
6.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
6.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
6.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
6.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
6.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
6.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
6.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
6.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
6.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
6.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
6.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
6.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
5.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
5.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
5.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
5.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
5.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
5.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
5.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
5.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
5.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
5.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
5.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
5.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
5.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
4.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
4.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
4.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
4.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
4.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
4.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
4.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
4.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
4.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
4.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
4.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
4.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
4.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
4.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
3.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
3.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
2.3
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 9.8
Samples: 4
Max nTPM: 10.4
Min nTPM: 8.9
Sample A
Male
8.9
Sample B
Male
10.4
Sample C
Female
9.8
Sample D
Female
10.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.