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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
144.0
nTPM
HPA Brain:
238.8
nTPM
GTEx:
144.0
nTPM
FANTOM5:
201.1
Scaled Tags Per Million
Pig:
400.6
nTPM
Mouse:
702.4
nTPM
Allen mouse:
14.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA005459
Antibody CAB010877
Glial cells
Not detected
Not detected
Neuronal cells
Not detected
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
238.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 136.1
2621
Female, age 67, right hemisphere
202.0
1898
Male, age 80, left hemisphere
180.6
1855
Male, age 76, left hemisphere
152.1
2148
Female, age 91, left hemisphere
115.8
1911
Female, age 85, right hemisphere
89.2
2529
Female, age 94, left hemisphere
76.7
Dentate gyrus nTPM: 146.9
2010
Male, age 76, both hemispheres
216.0
2530
Female, age 94, left hemisphere
159.8
2246
Female, age 85, both hemispheres
149.3
2531
Female, age 67, both hemispheres
134.5
1927
Female, age 91, both hemispheres
133.8
2528
Male, age 74, both hemispheres
87.8
Entorhinal gyrus nTPM: 181.0
2764
Male, age 80, right hemisphere
269.1
2613
Female, age 94, left hemisphere
221.1
1938
Female, age 85, left hemisphere
188.1
1787
Male, age 76, left hemisphere
169.2
2686
Male, age 75, right hemisphere
154.1
2117
Female, age 91, right hemisphere
84.7
Hippocampus, CA1 nTPM: 166.3
2749
Male, age 80, left hemisphere
279.1
1873
Female, age 85, both hemispheres
190.4
2527
Male, age 74, both hemispheres
139.6
2045
Male, age 76, both hemispheres
124.5
2082
Female, age 91, right hemisphere
97.9
Hippocampus, CA2 nTPM: 139.3
1963
Male, age 80, left hemisphere
211.6
1892
Male, age 76, both hemispheres
205.1
1940
Female, age 85, left hemisphere
140.2
2113
Female, age 91, right hemisphere
97.3
2437
Female, age 94, left hemisphere
93.0
2249
Male, age 74, both hemispheres
88.8
Hippocampus, CA3 nTPM: 118.8
2861
Female, age 67, both hemispheres
156.9
1867
Male, age 76, both hemispheres
139.7
2137
Male, age 80, left hemisphere
133.5
2436
Male, age 74, both hemispheres
100.7
2620
Female, age 94, left hemisphere
94.8
1891
Female, age 85, both hemispheres
87.2
Parahippocampal cortex nTPM: 195.5
1850
Male, age 80, both hemispheres
305.4
2532
Female, age 72, left hemisphere
290.0
2622
Female, age 67, right hemisphere
246.9
2245
Female, age 91, both hemispheres
236.7
1933
Female, age 85, both hemispheres
221.1
1990
Female, age 91, right hemisphere
145.8
2018
Male, age 76, both hemispheres
145.1
2693
Female, age 94, both hemispheres
142.9
2250
Female, age 67, right hemisphere
121.8
2692
Male, age 74, both hemispheres
99.1
Perirhinal gyrus nTPM: 238.8
2848
Male, age 76, right hemisphere
278.1
1794
Male, age 80, right hemisphere
277.1
1841
Female, age 85, right hemisphere
256.0
1847
Female, age 91, left hemisphere
214.0
2521
Female, age 94, right hemisphere
168.9
Subiculum nTPM: 103.5
1977
Female, age 85, both hemispheres
146.2
1901
Male, age 80, both hemispheres
115.2
2042
Male, age 76, both hemispheres
107.5
2438
Female, age 94, left hemisphere
92.9
2619
Male, age 74, both hemispheres
84.5
2729
Female, age 91, right hemisphere
74.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
144.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 144.0
Samples: 197
Max nTPM: 506.9
Min nTPM: 36.5
Std nTPM: 95.8
Median nTPM: 110.1
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
506.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
492.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
481.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
461.0
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
419.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
419.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
388.6
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
368.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
356.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
343.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
341.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
340.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
307.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
292.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
290.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
287.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
286.8
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
284.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
278.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
278.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
272.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
263.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
262.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
260.2
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
256.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
255.1
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
253.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
253.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
250.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
243.2
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
242.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
238.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
237.7
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
234.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
230.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
230.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
228.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
228.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
226.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
220.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
218.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
212.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
205.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
204.7
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
204.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
203.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
197.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
193.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
193.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
185.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
181.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
175.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
174.6
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
174.4
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
172.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
172.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
172.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
168.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
164.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
161.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
156.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
156.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
154.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
152.2
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
151.4
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
151.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
150.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
148.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
145.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
141.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
139.7
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
137.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
135.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
134.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
133.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
132.9
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
129.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
128.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
128.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
126.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
125.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
125.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
125.5
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
124.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
123.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
122.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
121.6
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
121.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
120.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
120.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
119.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
119.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
117.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
117.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
116.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
114.3
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
112.0
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
110.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
110.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
109.7
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
109.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
109.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
109.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
107.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
103.6
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
100.3
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
100.0
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
97.9
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
97.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
96.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
95.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
94.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
94.3
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
94.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
93.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
93.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
93.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
92.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
92.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
91.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
90.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
90.1
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
90.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
88.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
88.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
88.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
88.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
88.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
87.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
87.1
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
86.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
85.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
84.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
84.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
84.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
84.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
83.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
83.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
82.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
81.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
81.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
81.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
80.1
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
79.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
78.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
78.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
78.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
77.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
75.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
75.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
75.2
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
75.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
74.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
74.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
73.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
72.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
72.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
72.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
70.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
70.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
68.8
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
68.6
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
67.7
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
67.7
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
65.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
65.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
63.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
63.3
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
62.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
62.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
62.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
62.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
60.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
59.5
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
59.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
58.6
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
58.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
57.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
57.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
56.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
56.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
55.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
54.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
54.7
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
54.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
53.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
52.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
51.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
51.3
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
50.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
50.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
49.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
49.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
43.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
41.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
36.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
36.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
702.4
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 544.1
Samples: 4
Max nTPM: 626.4
Min nTPM: 444.9
Sample A
Male
444.9
Sample B
Male
507.6
Sample C
Female
597.5
Sample D
Female
626.4
Hippocampal formation nTPM: 702.4
Samples: 4
Max nTPM: 774.4
Min nTPM: 635.4
Sample A
Male
774.4
Sample B
Male
701.7
Sample C
Female
698.2
Sample D
Female
635.4
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.