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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
151.5
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 53.3
1984
Male, age 76, both hemispheres
94.0
2301
Female, age 85, both hemispheres
55.9
2188
Female, age 91, both hemispheres
35.6
2090
Male, age 80, both hemispheres
27.8
Dorsal cochlear nucleus nTPM: 41.3
2058
Male, age 76, both hemispheres
55.7
2370
Male, age 61, both hemispheres
48.5
2378
Male, age 80, both hemispheres
38.5
2802
Male, age 74, right hemisphere
36.0
2187
Female, age 91, both hemispheres
27.6
Dorsal tegmental nucleus nTPM: 38.8
2083
Male, age 80, both hemispheres
55.9
1936
Male, age 76, left hemisphere
51.3
2358
Male, age 61, both hemispheres
28.4
2326
Male, age 74, both hemispheres
19.4
Dorsolateral tegmental area nTPM: 28.8
2654
Male, age 80, both hemispheres
54.0
2751
Female, age 85, both hemispheres
39.6
2360
Male, age 74, both hemispheres
20.1
2141
Male, age 76, both hemispheres
19.9
2337
Male, age 61, both hemispheres
10.3
Kolliker-Fuse nucleus nTPM: 76.4
2163
Male, age 80, both hemispheres
116.8
2793
Female, age 91, left hemisphere
77.8
2315
Male, age 76, right hemisphere
34.6
Lateral lemniscal nuclei nTPM: 139.9
2169
Male, age 76, both hemispheres
173.8
2453
Male, age 74, right hemisphere
168.7
2036
Male, age 80, both hemispheres
145.3
2746
Female, age 85, left hemisphere
120.2
2320
Female, age 91, left hemisphere
91.3
Lateral parabrachial nucleus nTPM: 69.7
2139
Female, age 85, right hemisphere
135.0
2013
Male, age 80, both hemispheres
76.1
2790
Male, age 61, both hemispheres
43.4
2792
Male, age 76, both hemispheres
24.4
Lateral vestibular nucleus nTPM: 78.7
2184
Male, age 76, both hemispheres
111.4
2311
Male, age 80, both hemispheres
46.0
Locus coeruleus nTPM: 30.1
2123
Female, age 91, both hemispheres
50.5
2720
Male, age 74, both hemispheres
32.9
2162
Male, age 80, both hemispheres
28.2
2317
Female, age 72, unknown
27.1
2788
Male, age 74, unknown
25.9
2014
Male, age 55, unknown
23.7
1980
Male, age 76, both hemispheres
22.7
Medial parabrachial nucleus nTPM: 56.7
2854
Male, age 80, both hemispheres
74.6
2156
Male, age 61, both hemispheres
70.6
2463
Female, age 85, right hemisphere
54.2
2786
Male, age 76, both hemispheres
53.0
2170
Female, age 91, both hemispheres
31.2
Medial periolivary nuclei nTPM: 123.5
2171
Female, age 85, both hemispheres
203.3
2063
Male, age 76, both hemispheres
179.2
2791
Male, age 74, right hemisphere
107.4
2458
Female, age 91, both hemispheres
67.2
2081
Male, age 80, both hemispheres
60.3
Motor facial nucleus nTPM: 115.3
2062
Male, age 76, both hemispheres
187.0
2365
Male, age 74, right hemisphere
147.0
2327
Male, age 80, both hemispheres
115.4
2795
Female, age 91, both hemispheres
94.5
2697
Female, age 85, both hemispheres
87.9
2126
Male, age 61, both hemispheres
60.0
Motor trigeminal nucleus nTPM: 82.1
2079
Male, age 80, both hemispheres
131.1
2560
Male, age 74, both hemispheres
104.6
2309
Male, age 76, both hemispheres
76.2
2335
Male, age 61, both hemispheres
54.6
2321
Female, age 91, both hemispheres
44.1
Nuclei of the trapezoid body nTPM: 151.5
2159
Male, age 61, both hemispheres
209.2
2735
Female, age 85, both hemispheres
187.6
1983
Male, age 76, both hemispheres
171.6
2368
Female, age 91, both hemispheres
97.5
2166
Male, age 80, both hemispheres
91.5
Nucleus raphe magnus nTPM: 147.2
2172
Female, age 85, both hemispheres
201.4
2455
Male, age 74, both hemispheres
185.5
2160
Male, age 61, both hemispheres
176.8
2051
Male, age 76, both hemispheres
124.1
2328
Male, age 80, both hemispheres
105.1
2459
Female, age 91, both hemispheres
90.0
Paramedian reticular nucleus nTPM: 72.4
2050
Female, age 85, both hemispheres
112.7
2057
Male, age 80, both hemispheres
72.8
2313
Male, age 61, both hemispheres
58.4
2052
Male, age 76, both hemispheres
45.7
Pedunculopontine tegmental nucleus nTPM: 38.1
1921
Female, age 85, both hemispheres
47.2
2338
Male, age 61, both hemispheres
38.8
2334
Male, age 80, both hemispheres
28.4
Pontine nuclei nTPM: 120.9
2787
Female, age 85, both hemispheres
194.3
1968
Male, age 76, left hemisphere
171.7
2727
Male, age 61, right hemisphere
152.7
1863
Male, age 55, unknown
143.1
2109
Female, age 72, unknown
90.6
2115
Male, age 80, left hemisphere
82.9
2454
Male, age 74, left hemisphere
80.5
2319
Female, age 91, both hemispheres
51.2
Pontine raphe nucleus nTPM: 66.1
2122
Female, age 85, midline
122.7
2853
Male, age 76, midline
9.5
Posteroventral cochlear nucleus nTPM: 49.7
2752
Female, age 85, both hemispheres
83.5
2070
Male, age 76, both hemispheres
69.2
2371
Male, age 61, both hemispheres
46.9
2341
Male, age 80, both hemispheres
42.0
2135
Female, age 91, both hemispheres
7.1
Principal sensory trigeminal nucleus nTPM: 113.5
2158
Male, age 61, both hemispheres
152.6
2008
Male, age 80, left hemisphere
141.1
2324
Male, age 76, both hemispheres
93.4
2367
Female, age 91, left hemisphere
66.9
Reticular pontine nucleus, caudal nTPM: 85.0
2332
Male, age 80, right hemisphere
136.6
2092
Male, age 76, both hemispheres
104.7
2457
Female, age 91, both hemispheres
65.9
2559
Male, age 74, both hemispheres
32.6
Reticular pontine nucleus, oral nTPM: 73.3
2361
Male, age 74, both hemispheres
119.9
2012
Female, age 85, both hemispheres
97.6
2366
Female, age 91, both hemispheres
57.5
1939
Male, age 80, both hemispheres
46.0
2167
Male, age 76, both hemispheres
45.6
Reticulotegmental nucleus nTPM: 71.6
2325
Male, age 76, both hemispheres
94.1
2333
Male, age 80, both hemispheres
72.4
2452
Male, age 74, both hemispheres
71.2
2322
Female, age 91, both hemispheres
48.6
Spinal trigeminal nucleus, oral nTPM: 81.9
2164
Male, age 80, both hemispheres
99.2
2737
Female, age 85, both hemispheres
93.9
1978
Male, age 76, both hemispheres
52.5
Subcoeruleus area nTPM: 55.5
2089
Male, age 76, left hemisphere
118.8
1958
Male, age 80, both hemispheres
88.3
2323
Female, age 91, left hemisphere
32.1
2369
Female, age 85, left hemisphere
19.5
2451
Male, age 74, both hemispheres
18.6
Superior olive nTPM: 105.2
1875
Female, age 85, both hemispheres
142.4
2020
Male, age 76, both hemispheres
104.2
2364
Male, age 74, right hemisphere
96.6
2561
Female, age 91, both hemispheres
95.4
2329
Male, age 80, right hemisphere
87.4
Ventral periolivary nuclei nTPM: 133.8
2130
Female, age 85, both hemispheres
172.9
2165
Male, age 80, both hemispheres
141.2
2794
Female, age 91, left hemisphere
124.4
2023
Male, age 76, both hemispheres
96.6
Ventrolateral tegmental area, A5 NE cell group nTPM: 88.5
2449
Male, age 74, both hemispheres
158.8
1959
Male, age 76, both hemispheres
112.1
2840
Female, age 85, both hemispheres
94.2
2161
Male, age 80, both hemispheres
84.6
2456
Female, age 91, both hemispheres
54.4
2359
Male, age 61, both hemispheres
27.1
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
38.4
Pig sample
Sample description
nTPM
Pons nTPM: 38.4
Samples: 4
Max nTPM: 91.0
Min nTPM: 19.3
Sample A
Female
21.8
Sample B
Female
19.3
Sample C
Male
21.6
Sample D
Male
91.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.