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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
8.8
nTPM
HPA Brain:
90.8
nTPM
GTEx:
8.8
nTPM
FANTOM5:
41.8
Scaled Tags Per Million
Pig:
26.0
nTPM
Mouse:
2.9
nTPM
Allen mouse:
12.8
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
90.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 57.0
2586
Male, age 75, left hemisphere
80.1
2828
Female, age 72, unknown
75.9
2219
Male, age 76, both hemispheres
66.0
1833
Male, age 53, unknown
55.9
1827
Male, age 72, unknown
55.7
2411
Female, age 72, unknown
55.6
2666
Male, age 74, left hemisphere
47.1
1870
Female, age 42, unknown
46.9
2019
Male, age 18, unknown
44.6
1830
Male, age 51, unknown
42.3
Dorsal raphe nucleus nTPM: 86.0
2047
Male, age 72, unknown
128.9
2298
Female, age 72, unknown
92.6
2016
Female, age 72, unknown
75.4
2750
Male, age 76, both hemispheres
67.8
1828
Male, age 53, unknown
65.4
Inferior colliculus nTPM: 53.5
1848
Female, age 42, unknown
57.8
1890
Male, age 53, unknown
56.8
2849
Male, age 72, unknown
56.4
2097
Female, age 72, unknown
43.2
Median raphe nucleus nTPM: 90.8
2220
Male, age 76, midline
90.8
Periaquaductal grey, anterior nTPM: 65.2
1795
Male, age 51, unknown
78.8
2502
Female, age 75, unknown
59.9
1947
Male, age 18, unknown
56.9
Periaquaductal grey, dorsal nTPM: 67.9
1840
Male, age 53, unknown
89.8
2850
Male, age 76, both hemispheres
67.0
2464
Female, age 72, unknown
66.2
1831
Male, age 72, unknown
48.6
Periaquaductal grey, lateral nTPM: 57.0
2140
Male, age 76, both hemispheres
68.2
2053
Male, age 18, unknown
56.8
2272
Male, age 74, both hemispheres
45.9
Pretectal area nTPM: 58.2
2224
Female, age 72, unknown
70.1
1944
Female, age 72, unknown
68.6
2667
Female, age 75, unknown
64.8
1817
Female, age 42, unknown
62.1
1815
Male, age 53, unknown
61.0
1816
Male, age 51, unknown
56.5
2316
Male, age 76, right hemisphere
54.6
2825
Male, age 18, unknown
53.3
2273
Male, age 74, both hemispheres
49.8
2007
Male, age 72, unknown
49.7
2407
Male, age 75, both hemispheres
49.7
Red nucleus nTPM: 43.9
2725
Female, age 75, unknown
56.5
2785
Male, age 18, unknown
50.1
2823
Male, age 76, right hemisphere
47.2
2584
Male, age 75, left hemisphere
46.9
2588
Male, age 74, left hemisphere
42.7
2503
Female, age 72, unknown
42.2
2227
Male, age 72, unknown
42.0
1904
Male, age 53, unknown
41.7
2769
Male, age 72, unknown
41.5
1954
Female, age 42, unknown
40.9
1821
Female, age 72, unknown
39.8
1865
Male, age 51, unknown
34.8
Substantia nigra nTPM: 85.7
1916
Female, age 42, unknown
135.0
2699
Male, age 18, unknown
116.6
1851
Male, age 51, unknown
98.8
2241
Male, age 72, unknown
87.0
2409
Female, age 72, unknown
81.1
2665
Male, age 74, both hemispheres
75.7
2590
Female, age 75, unknown
73.2
2583
Male, age 75, right hemisphere
65.2
1941
Male, age 53, unknown
63.0
1889
Female, age 72, unknown
61.0
Superior colliculus nTPM: 53.1
1796
Male, age 53, unknown
71.9
2664
Male, age 75, both hemispheres
64.4
2087
Female, age 72, unknown
58.3
1839
Male, age 51, unknown
52.9
1995
Male, age 72, unknown
52.4
1913
Female, age 42, unknown
51.3
2261
Male, age 18, unknown
49.1
1895
Male, age 76, right hemisphere
44.6
2668
Female, age 75, unknown
44.0
2587
Male, age 74, left hemisphere
42.5
Ventral tegmental area nTPM: 74.1
1915
Female, age 42, unknown
86.2
2218
Male, age 76, both hemispheres
83.8
1942
Male, age 51, unknown
83.7
2410
Female, age 72, unknown
73.4
2021
Male, age 53, unknown
61.1
2223
Female, age 72, unknown
56.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
8.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 8.8
Samples: 139
Max nTPM: 33.3
Min nTPM: 0.6
Std nTPM: 5.2
Median nTPM: 7.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
33.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
27.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
26.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
26.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
24.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
19.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
19.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
17.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
17.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
17.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
16.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
16.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
15.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
14.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
13.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
13.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
13.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
13.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
13.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
13.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
13.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
13.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
13.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
12.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
12.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
12.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
11.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
11.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
11.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
11.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
11.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
11.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
11.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
11.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
11.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
11.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
10.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
10.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
10.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
10.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
10.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
9.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
9.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
9.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
9.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
9.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
9.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
9.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
9.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
9.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
9.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
9.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
9.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
9.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
9.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
8.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
8.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
8.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
8.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
8.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
8.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
8.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
8.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
8.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
8.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
8.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
8.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
7.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
7.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
7.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
7.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
7.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
7.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
7.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
7.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
7.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
7.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
7.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
7.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
7.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
7.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
7.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
7.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
6.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
6.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
6.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
6.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
6.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
6.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
6.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
6.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
6.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
6.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
6.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
6.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
6.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
6.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
6.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
6.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
6.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
6.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
5.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
5.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
5.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
5.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
5.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
5.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
5.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
5.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
5.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
5.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
5.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
5.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
5.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
5.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
4.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
4.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
4.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
4.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
3.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
3.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
3.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
3.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
3.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
3.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
3.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
3.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
2.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
2.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
2.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
2.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
2.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
2.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
2.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
2.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
1.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
0.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 3.0
Samples: 4
Max nTPM: 3.6
Min nTPM: 2.5
Sample A
Male
2.5
Sample B
Male
3.0
Sample C
Female
2.7
Sample D
Female
3.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.