We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
4.8
nTPM
HPA Brain:
54.7
nTPM
GTEx:
4.8
nTPM
FANTOM5:
64.8
Scaled Tags Per Million
Pig:
20.4
nTPM
Mouse:
3.8
nTPM
Allen mouse:
13.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA057127
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
54.7
Sample id
Sample description
nTPM
Hippocampus nTPM: 54.7
2148
Female, age 91, left hemisphere
68.6
2529
Female, age 94, left hemisphere
68.1
1855
Male, age 76, left hemisphere
53.7
1898
Male, age 80, left hemisphere
51.7
1911
Female, age 85, right hemisphere
49.3
2621
Female, age 67, right hemisphere
36.9
Dentate gyrus nTPM: 45.6
2528
Male, age 74, both hemispheres
68.2
2246
Female, age 85, both hemispheres
61.0
2530
Female, age 94, left hemisphere
40.6
2531
Female, age 67, both hemispheres
36.7
1927
Female, age 91, both hemispheres
34.1
2010
Male, age 76, both hemispheres
32.9
Entorhinal gyrus nTPM: 46.8
2117
Female, age 91, right hemisphere
70.4
2764
Male, age 80, right hemisphere
43.4
1938
Female, age 85, left hemisphere
42.7
1787
Male, age 76, left hemisphere
42.1
2613
Female, age 94, left hemisphere
41.1
2686
Male, age 75, right hemisphere
40.9
Hippocampus, CA1 nTPM: 52.8
2527
Male, age 74, both hemispheres
77.1
2082
Female, age 91, right hemisphere
57.7
1873
Female, age 85, both hemispheres
53.1
2045
Male, age 76, both hemispheres
50.6
2749
Male, age 80, left hemisphere
25.7
Hippocampus, CA2 nTPM: 45.0
2113
Female, age 91, right hemisphere
60.5
1940
Female, age 85, left hemisphere
56.7
2249
Male, age 74, both hemispheres
50.6
1963
Male, age 80, left hemisphere
44.7
2437
Female, age 94, left hemisphere
36.3
1892
Male, age 76, both hemispheres
21.4
Hippocampus, CA3 nTPM: 46.5
2620
Female, age 94, left hemisphere
67.9
1891
Female, age 85, both hemispheres
53.7
2436
Male, age 74, both hemispheres
48.8
2861
Female, age 67, both hemispheres
46.4
2137
Male, age 80, left hemisphere
33.8
1867
Male, age 76, both hemispheres
28.6
Parahippocampal cortex nTPM: 44.3
2692
Male, age 74, both hemispheres
67.4
2622
Female, age 67, right hemisphere
54.3
1990
Female, age 91, right hemisphere
44.5
2018
Male, age 76, both hemispheres
43.4
1850
Male, age 80, both hemispheres
42.8
2245
Female, age 91, both hemispheres
42.8
1933
Female, age 85, both hemispheres
42.1
2250
Female, age 67, right hemisphere
41.3
2532
Female, age 72, left hemisphere
32.6
2693
Female, age 94, both hemispheres
31.7
Perirhinal gyrus nTPM: 39.5
1847
Female, age 91, left hemisphere
49.1
2521
Female, age 94, right hemisphere
42.5
1794
Male, age 80, right hemisphere
41.4
1841
Female, age 85, right hemisphere
36.6
2848
Male, age 76, right hemisphere
27.7
Subiculum nTPM: 54.1
2729
Female, age 91, right hemisphere
77.3
2619
Male, age 74, both hemispheres
72.1
2438
Female, age 94, left hemisphere
48.1
1977
Female, age 85, both hemispheres
46.1
1901
Male, age 80, both hemispheres
41.7
2042
Male, age 76, both hemispheres
39.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
4.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 4.8
Samples: 197
Max nTPM: 18.5
Min nTPM: 1.3
Std nTPM: 2.8
Median nTPM: 4.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
18.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
14.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
13.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
12.6
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
12.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
12.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
12.2
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
11.5
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
11.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
11.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
11.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
11.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
10.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
10.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
9.8
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
9.5
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
9.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
8.9
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
8.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
8.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
8.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
8.5
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
8.1
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
7.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
7.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
7.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
7.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
7.3
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
7.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
7.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
7.0
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
6.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
6.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
6.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
6.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
6.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
6.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
6.5
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
6.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
6.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
6.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
6.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
6.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
6.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
6.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
6.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
6.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
6.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
6.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
5.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
5.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
5.9
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
5.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
5.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
5.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
5.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
5.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
5.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
5.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
5.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
5.3
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
5.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
5.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
5.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
5.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
5.0
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
4.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
4.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
4.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
4.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
4.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
4.8
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
4.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
4.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
4.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
4.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
4.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
4.7
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
4.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
4.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
4.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
4.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
4.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
4.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
4.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
4.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
4.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
4.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
4.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
4.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
4.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
4.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
4.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
4.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
4.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
4.2
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
4.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
4.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
4.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
4.1
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
4.1
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
4.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
4.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
4.1
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
4.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
4.0
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
4.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
4.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
4.0
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
3.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
3.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
3.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
3.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
3.9
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
3.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
3.8
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
3.8
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
3.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
3.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
3.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
3.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
3.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
3.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
3.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
3.6
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
3.6
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
3.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
3.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
3.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
3.5
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
3.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
3.4
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
3.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
3.3
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
3.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
3.3
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
3.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
3.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
3.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
3.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
3.2
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
3.2
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
3.2
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
3.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
3.0
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
3.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
3.0
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
2.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
2.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
2.9
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
2.8
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
2.8
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
2.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
2.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
2.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
2.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
2.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
2.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
2.7
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
2.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
2.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
2.6
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
2.5
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
2.4
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
2.4
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
2.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
2.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
2.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
2.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
2.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
2.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
2.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
2.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
2.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
2.2
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
2.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
2.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
2.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
2.0
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
1.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
1.9
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
1.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
1.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
1.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
1.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
1.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
1.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
1.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
1.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
1.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
1.5
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
1.5
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
1.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
1.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
1.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
1.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
1.3
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3.8
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 3.8
Samples: 4
Max nTPM: 5.3
Min nTPM: 3.1
Sample A
Male
3.7
Sample B
Male
3.1
Sample C
Female
3.2
Sample D
Female
5.3
Hippocampal formation nTPM: 2.1
Samples: 4
Max nTPM: 2.4
Min nTPM: 1.8
Sample A
Male
2.4
Sample B
Male
1.8
Sample C
Female
1.9
Sample D
Female
2.3
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.