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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
38.6
nTPM
HPA Brain:
28.4
nTPM
GTEx:
38.6
nTPM
FANTOM5:
43.5
Scaled Tags Per Million
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
28.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 20.6
2411
Female, age 72, unknown
24.2
2019
Male, age 18, unknown
23.0
1827
Male, age 72, unknown
22.8
1870
Female, age 42, unknown
20.9
2586
Male, age 75, left hemisphere
20.6
2666
Male, age 74, left hemisphere
20.1
1830
Male, age 51, unknown
19.9
1833
Male, age 53, unknown
19.6
2219
Male, age 76, both hemispheres
18.2
2828
Female, age 72, unknown
16.4
Dorsal raphe nucleus nTPM: 22.3
2047
Male, age 72, unknown
27.6
2298
Female, age 72, unknown
24.3
1828
Male, age 53, unknown
23.1
2750
Male, age 76, both hemispheres
22.9
2016
Female, age 72, unknown
13.8
Inferior colliculus nTPM: 18.3
2097
Female, age 72, unknown
22.1
1890
Male, age 53, unknown
17.9
1848
Female, age 42, unknown
17.0
2849
Male, age 72, unknown
16.2
Median raphe nucleus nTPM: 28.4
2220
Male, age 76, midline
28.4
Periaquaductal grey, anterior nTPM: 21.0
1947
Male, age 18, unknown
21.3
1795
Male, age 51, unknown
21.2
2502
Female, age 75, unknown
20.5
Periaquaductal grey, dorsal nTPM: 18.8
2850
Male, age 76, both hemispheres
21.3
1831
Male, age 72, unknown
19.0
1840
Male, age 53, unknown
18.9
2464
Female, age 72, unknown
16.1
Periaquaductal grey, lateral nTPM: 19.0
2272
Male, age 74, both hemispheres
22.5
2140
Male, age 76, both hemispheres
17.7
2053
Male, age 18, unknown
16.7
Pretectal area nTPM: 22.3
1816
Male, age 51, unknown
27.6
1817
Female, age 42, unknown
27.0
1944
Female, age 72, unknown
26.9
2407
Male, age 75, both hemispheres
24.8
2007
Male, age 72, unknown
24.2
1815
Male, age 53, unknown
23.4
2273
Male, age 74, both hemispheres
19.6
2825
Male, age 18, unknown
19.3
2224
Female, age 72, unknown
18.5
2667
Female, age 75, unknown
17.9
2316
Male, age 76, right hemisphere
16.2
Red nucleus nTPM: 19.5
1821
Female, age 72, unknown
25.5
2725
Female, age 75, unknown
24.3
2785
Male, age 18, unknown
21.7
2769
Male, age 72, unknown
20.0
2584
Male, age 75, left hemisphere
19.6
2503
Female, age 72, unknown
18.8
1865
Male, age 51, unknown
18.5
1954
Female, age 42, unknown
17.9
1904
Male, age 53, unknown
17.3
2227
Male, age 72, unknown
17.2
2588
Male, age 74, left hemisphere
17.2
2823
Male, age 76, right hemisphere
16.0
Substantia nigra nTPM: 26.3
2409
Female, age 72, unknown
35.4
1916
Female, age 42, unknown
32.8
1851
Male, age 51, unknown
30.5
1941
Male, age 53, unknown
30.5
2699
Male, age 18, unknown
25.1
2590
Female, age 75, unknown
24.6
1889
Female, age 72, unknown
24.1
2241
Male, age 72, unknown
23.8
2665
Male, age 74, both hemispheres
20.1
2583
Male, age 75, right hemisphere
16.2
Superior colliculus nTPM: 20.1
2664
Male, age 75, both hemispheres
23.3
2587
Male, age 74, left hemisphere
22.9
1895
Male, age 76, right hemisphere
21.3
1796
Male, age 53, unknown
21.0
2668
Female, age 75, unknown
20.9
2261
Male, age 18, unknown
20.5
2087
Female, age 72, unknown
20.1
1913
Female, age 42, unknown
18.9
1995
Male, age 72, unknown
16.5
1839
Male, age 51, unknown
15.6
Ventral tegmental area nTPM: 24.1
1915
Female, age 42, unknown
29.5
2410
Female, age 72, unknown
28.1
2218
Male, age 76, both hemispheres
24.0
1942
Male, age 51, unknown
21.7
2223
Female, age 72, unknown
21.7
2021
Male, age 53, unknown
19.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
38.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 38.6
Samples: 139
Max nTPM: 69.3
Min nTPM: 22.8
Std nTPM: 8.0
Median nTPM: 37.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
69.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
62.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
59.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
57.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
55.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
54.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
53.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
52.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
51.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
51.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
50.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
49.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
49.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
48.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
48.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
48.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
48.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
47.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
47.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
47.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
47.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
46.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
46.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
46.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
46.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
46.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
45.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
45.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
45.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
45.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
45.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
45.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
44.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
44.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
44.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
44.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
43.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
43.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
43.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
42.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
42.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
42.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
42.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
41.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
41.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
41.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
41.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
40.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
40.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
40.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
40.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
39.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
39.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
39.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
38.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
38.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
38.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
38.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
38.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
38.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
38.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
38.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
38.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
38.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
37.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
37.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
37.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
37.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
37.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
37.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
37.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
37.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
36.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
36.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
36.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
36.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
36.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
36.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
35.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
35.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
35.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
35.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
35.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
35.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
34.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
34.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
34.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
34.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
34.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
34.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
34.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
34.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
34.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
33.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
33.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
33.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
33.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
33.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
33.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
33.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
33.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
33.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
32.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
32.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
32.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
32.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
32.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
32.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
32.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
32.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
32.3
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
32.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
32.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
31.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
31.9
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
31.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
31.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
31.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
31.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
30.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
30.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
30.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
30.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
30.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
30.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
30.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
30.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
30.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
29.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
29.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
28.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
28.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
27.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
26.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
26.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
25.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
25.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
23.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
22.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.