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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
55.2
nTPM
HPA Brain:
254.0
nTPM
GTEx:
55.2
nTPM
FANTOM5:
168.9
Scaled Tags Per Million
Pig:
94.7
nTPM
Mouse:
14.6
nTPM
Allen mouse:
0.9
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
254.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 108.2
2828
Female, age 72, unknown
228.4
1827
Male, age 72, unknown
128.9
1833
Male, age 53, unknown
121.5
2411
Female, age 72, unknown
115.0
1870
Female, age 42, unknown
113.3
1830
Male, age 51, unknown
105.9
2586
Male, age 75, left hemisphere
95.7
2666
Male, age 74, left hemisphere
68.1
2019
Male, age 18, unknown
55.7
2219
Male, age 76, both hemispheres
49.7
Dorsal raphe nucleus nTPM: 156.0
2016
Female, age 72, unknown
225.6
1828
Male, age 53, unknown
175.1
2298
Female, age 72, unknown
150.4
2047
Male, age 72, unknown
132.6
2750
Male, age 76, both hemispheres
96.6
Inferior colliculus nTPM: 121.2
2849
Male, age 72, unknown
160.2
1848
Female, age 42, unknown
136.5
2097
Female, age 72, unknown
100.3
1890
Male, age 53, unknown
87.9
Median raphe nucleus nTPM: 89.6
2220
Male, age 76, midline
89.6
Periaquaductal grey, anterior nTPM: 143.8
1947
Male, age 18, unknown
158.4
1795
Male, age 51, unknown
151.2
2502
Female, age 75, unknown
121.7
Periaquaductal grey, dorsal nTPM: 191.6
2850
Male, age 76, both hemispheres
233.1
1840
Male, age 53, unknown
182.5
1831
Male, age 72, unknown
175.5
2464
Female, age 72, unknown
175.4
Periaquaductal grey, lateral nTPM: 254.0
2053
Male, age 18, unknown
327.1
2140
Male, age 76, both hemispheres
278.1
2272
Male, age 74, both hemispheres
156.7
Pretectal area nTPM: 173.5
2667
Female, age 75, unknown
274.6
2273
Male, age 74, both hemispheres
257.2
2825
Male, age 18, unknown
213.0
1944
Female, age 72, unknown
202.8
2316
Male, age 76, right hemisphere
180.1
2224
Female, age 72, unknown
154.7
1816
Male, age 51, unknown
148.9
2407
Male, age 75, both hemispheres
147.2
1815
Male, age 53, unknown
137.1
1817
Female, age 42, unknown
121.1
2007
Male, age 72, unknown
71.9
Red nucleus nTPM: 104.7
2725
Female, age 75, unknown
139.0
1865
Male, age 51, unknown
119.1
1954
Female, age 42, unknown
117.1
2769
Male, age 72, unknown
116.2
2823
Male, age 76, right hemisphere
116.2
2503
Female, age 72, unknown
113.7
2227
Male, age 72, unknown
112.7
2588
Male, age 74, left hemisphere
106.1
1821
Female, age 72, unknown
105.5
1904
Male, age 53, unknown
104.2
2584
Male, age 75, left hemisphere
54.8
2785
Male, age 18, unknown
51.9
Substantia nigra nTPM: 107.5
2699
Male, age 18, unknown
150.5
2409
Female, age 72, unknown
133.3
1916
Female, age 42, unknown
124.5
1889
Female, age 72, unknown
117.4
2590
Female, age 75, unknown
99.1
2241
Male, age 72, unknown
95.4
1851
Male, age 51, unknown
95.1
2583
Male, age 75, right hemisphere
92.2
2665
Male, age 74, both hemispheres
87.6
1941
Male, age 53, unknown
79.9
Superior colliculus nTPM: 145.4
2087
Female, age 72, unknown
213.4
1995
Male, age 72, unknown
189.2
2261
Male, age 18, unknown
171.7
1913
Female, age 42, unknown
158.8
2664
Male, age 75, both hemispheres
154.2
1796
Male, age 53, unknown
143.4
1839
Male, age 51, unknown
126.5
2587
Male, age 74, left hemisphere
122.5
1895
Male, age 76, right hemisphere
99.0
2668
Female, age 75, unknown
75.3
Ventral tegmental area nTPM: 117.7
2021
Male, age 53, unknown
166.5
2410
Female, age 72, unknown
123.0
2218
Male, age 76, both hemispheres
122.3
1942
Male, age 51, unknown
115.6
1915
Female, age 42, unknown
96.3
2223
Female, age 72, unknown
82.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
55.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 55.2
Samples: 139
Max nTPM: 384.6
Min nTPM: 2.5
Std nTPM: 60.2
Median nTPM: 35.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
384.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
292.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
268.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
235.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
226.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
220.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
207.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
192.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
170.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
166.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
131.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
130.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
130.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
128.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
125.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
120.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
113.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
106.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
99.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
88.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
81.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
79.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
79.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
78.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
76.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
72.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
72.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
72.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
71.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
70.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
69.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
66.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
64.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
60.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
59.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
59.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
59.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
58.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
57.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
54.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
53.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
53.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
53.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
53.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
51.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
51.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
50.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
49.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
47.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
47.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
46.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
46.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
45.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
45.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
44.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
44.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
43.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
42.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
42.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
42.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
42.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
41.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
40.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
39.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
38.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
38.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
36.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
36.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
35.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
35.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
35.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
34.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
34.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
34.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
34.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
34.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
33.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
33.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
33.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
32.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
32.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
32.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
32.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
31.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
30.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
29.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
29.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
28.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
27.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
26.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
26.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
25.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
24.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
23.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
23.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
22.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
22.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
21.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
20.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
20.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
20.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
19.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
19.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
19.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
18.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
18.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
18.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
18.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
18.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
18.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
17.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
17.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
17.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
17.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
17.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
16.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
16.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
16.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
15.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
15.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
15.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
14.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
14.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
14.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
13.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
12.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
12.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
11.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
11.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
11.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
10.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
9.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
9.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
8.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
8.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
6.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
5.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
5.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
2.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 14.6
Samples: 4
Max nTPM: 15.9
Min nTPM: 13.6
Sample A
Male
15.9
Sample B
Male
13.6
Sample C
Female
14.1
Sample D
Female
14.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.