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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
High
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
90.7
nTPM
HPA Brain:
36.4
nTPM
GTEx:
90.7
nTPM
FANTOM5:
25.4
Scaled Tags Per Million
Pig:
37.0
nTPM
Mouse:
65.1
nTPM
Allen mouse:
0.1
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA041368
Antibody HPA057079
Glial cells
Medium
High
Neuronal cells
Not detected
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
36.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 33.8
2529
Female, age 94, left hemisphere
37.6
1898
Male, age 80, left hemisphere
36.6
1855
Male, age 76, left hemisphere
34.6
2148
Female, age 91, left hemisphere
33.2
1911
Female, age 85, right hemisphere
32.8
2621
Female, age 67, right hemisphere
28.0
Dentate gyrus nTPM: 32.5
2530
Female, age 94, left hemisphere
38.4
2010
Male, age 76, both hemispheres
37.3
1927
Female, age 91, both hemispheres
33.2
2528
Male, age 74, both hemispheres
30.5
2246
Female, age 85, both hemispheres
30.2
2531
Female, age 67, both hemispheres
25.3
Entorhinal gyrus nTPM: 30.6
2117
Female, age 91, right hemisphere
44.3
2686
Male, age 75, right hemisphere
30.6
1938
Female, age 85, left hemisphere
30.3
2764
Male, age 80, right hemisphere
27.5
1787
Male, age 76, left hemisphere
25.9
2613
Female, age 94, left hemisphere
25.1
Hippocampus, CA1 nTPM: 32.4
1873
Female, age 85, both hemispheres
40.2
2527
Male, age 74, both hemispheres
37.6
2749
Male, age 80, left hemisphere
29.9
2082
Female, age 91, right hemisphere
27.8
2045
Male, age 76, both hemispheres
26.7
Hippocampus, CA2 nTPM: 30.6
1963
Male, age 80, left hemisphere
34.6
2113
Female, age 91, right hemisphere
31.2
2249
Male, age 74, both hemispheres
31.2
1940
Female, age 85, left hemisphere
30.1
2437
Female, age 94, left hemisphere
28.4
1892
Male, age 76, both hemispheres
27.9
Hippocampus, CA3 nTPM: 29.5
1891
Female, age 85, both hemispheres
37.9
2436
Male, age 74, both hemispheres
34.2
1867
Male, age 76, both hemispheres
29.1
2137
Male, age 80, left hemisphere
29.1
2861
Female, age 67, both hemispheres
24.6
2620
Female, age 94, left hemisphere
22.4
Parahippocampal cortex nTPM: 31.8
2692
Male, age 74, both hemispheres
39.9
2250
Female, age 67, right hemisphere
35.2
1850
Male, age 80, both hemispheres
33.9
1990
Female, age 91, right hemisphere
33.3
2018
Male, age 76, both hemispheres
31.2
2245
Female, age 91, both hemispheres
31.0
1933
Female, age 85, both hemispheres
30.7
2693
Female, age 94, both hemispheres
28.6
2532
Female, age 72, left hemisphere
28.1
2622
Female, age 67, right hemisphere
26.4
Perirhinal gyrus nTPM: 26.9
1841
Female, age 85, right hemisphere
30.7
1847
Female, age 91, left hemisphere
28.3
2848
Male, age 76, right hemisphere
26.1
2521
Female, age 94, right hemisphere
25.5
1794
Male, age 80, right hemisphere
24.2
Subiculum nTPM: 36.4
2438
Female, age 94, left hemisphere
43.0
2729
Female, age 91, right hemisphere
38.6
2042
Male, age 76, both hemispheres
36.1
1901
Male, age 80, both hemispheres
34.5
2619
Male, age 74, both hemispheres
34.1
1977
Female, age 85, both hemispheres
31.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
90.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 90.7
Samples: 197
Max nTPM: 238.4
Min nTPM: 23.0
Std nTPM: 38.6
Median nTPM: 84.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
238.4
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
237.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
230.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
229.5
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
222.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
212.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
189.5
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
175.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
166.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
164.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
161.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
159.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
158.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
156.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
151.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
148.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
146.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
143.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
140.0
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
139.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
134.9
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
131.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
127.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
126.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
125.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
125.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
125.3
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
123.5
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
122.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
121.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
120.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
119.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
119.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
117.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
117.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
116.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
116.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
115.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
110.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
108.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
108.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
108.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
108.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
108.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
106.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
106.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
106.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
106.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
106.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
106.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
104.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
102.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
102.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
102.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
101.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
100.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
100.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
100.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
100.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
99.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
99.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
98.6
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
97.6
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
97.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
96.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
95.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
95.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
95.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
95.0
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
94.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
94.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
93.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
93.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
93.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
92.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
92.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
92.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
92.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
92.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
91.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
90.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
90.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
90.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
90.0
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
89.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
89.2
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
88.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
88.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
87.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
87.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
87.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
87.4
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
87.3
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
86.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
86.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
86.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
85.3
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
85.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
84.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
84.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
84.3
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
82.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
82.8
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
82.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
82.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
82.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
82.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
81.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
81.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
79.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
78.5
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
77.9
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
77.8
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
77.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
77.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
77.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
76.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
76.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
75.9
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
74.9
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
74.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
74.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
74.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
74.1
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
74.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
73.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
73.4
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
73.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
73.1
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
72.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
72.7
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
72.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
70.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
70.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
70.0
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
69.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
69.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
69.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
68.4
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
67.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
67.3
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
66.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
66.0
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
65.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
65.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
65.3
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
65.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
64.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
64.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
63.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
63.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
62.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
62.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
62.4
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
62.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
62.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
60.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
60.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
60.1
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
59.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
58.3
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
58.1
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
57.9
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
57.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
57.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
56.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
56.8
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
56.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
56.7
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
56.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
56.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
56.2
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
55.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
55.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
55.4
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
54.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
54.6
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
52.8
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
52.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
51.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
50.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
50.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
50.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
48.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
48.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
48.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
46.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
46.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
45.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
42.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
41.7
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
39.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
38.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
35.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
28.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
27.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
23.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
65.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 61.6
Samples: 4
Max nTPM: 64.0
Min nTPM: 59.2
Sample A
Male
61.9
Sample B
Male
61.3
Sample C
Female
64.0
Sample D
Female
59.2
Hippocampal formation nTPM: 65.1
Samples: 4
Max nTPM: 75.7
Min nTPM: 55.6
Sample A
Male
75.7
Sample B
Male
64.7
Sample C
Female
55.6
Sample D
Female
64.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.