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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
72.7
nTPM
HPA Brain:
219.2
nTPM
GTEx:
72.7
nTPM
FANTOM5:
218.9
Scaled Tags Per Million
Pig:
167.7
nTPM
Mouse:
620.1
nTPM
Allen mouse:
23.9
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
219.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 150.0
1827
Male, age 72, unknown
192.4
2586
Male, age 75, left hemisphere
184.3
2666
Male, age 74, left hemisphere
175.9
2411
Female, age 72, unknown
166.3
1870
Female, age 42, unknown
158.9
2219
Male, age 76, both hemispheres
148.1
1833
Male, age 53, unknown
131.9
2828
Female, age 72, unknown
125.4
1830
Male, age 51, unknown
116.6
2019
Male, age 18, unknown
100.3
Dorsal raphe nucleus nTPM: 194.4
2298
Female, age 72, unknown
277.4
2047
Male, age 72, unknown
224.0
2750
Male, age 76, both hemispheres
171.6
1828
Male, age 53, unknown
167.9
2016
Female, age 72, unknown
130.9
Inferior colliculus nTPM: 155.5
2097
Female, age 72, unknown
204.2
2849
Male, age 72, unknown
159.0
1848
Female, age 42, unknown
137.7
1890
Male, age 53, unknown
121.3
Median raphe nucleus nTPM: 219.2
2220
Male, age 76, midline
219.2
Periaquaductal grey, anterior nTPM: 217.8
2502
Female, age 75, unknown
250.6
1947
Male, age 18, unknown
207.7
1795
Male, age 51, unknown
195.1
Periaquaductal grey, dorsal nTPM: 166.5
1840
Male, age 53, unknown
208.1
2850
Male, age 76, both hemispheres
171.4
1831
Male, age 72, unknown
152.6
2464
Female, age 72, unknown
133.9
Periaquaductal grey, lateral nTPM: 168.1
2053
Male, age 18, unknown
174.7
2272
Male, age 74, both hemispheres
173.3
2140
Male, age 76, both hemispheres
156.1
Pretectal area nTPM: 175.0
2224
Female, age 72, unknown
244.8
1816
Male, age 51, unknown
220.7
1944
Female, age 72, unknown
192.7
2825
Male, age 18, unknown
192.0
2007
Male, age 72, unknown
174.0
2273
Male, age 74, both hemispheres
166.1
1817
Female, age 42, unknown
157.5
2407
Male, age 75, both hemispheres
156.0
1815
Male, age 53, unknown
151.3
2667
Female, age 75, unknown
146.5
2316
Male, age 76, right hemisphere
123.0
Red nucleus nTPM: 98.3
2584
Male, age 75, left hemisphere
142.3
1821
Female, age 72, unknown
124.5
2725
Female, age 75, unknown
113.8
2785
Male, age 18, unknown
103.9
2769
Male, age 72, unknown
97.1
2588
Male, age 74, left hemisphere
93.7
1954
Female, age 42, unknown
93.0
2227
Male, age 72, unknown
92.7
2503
Female, age 72, unknown
84.8
1904
Male, age 53, unknown
83.7
1865
Male, age 51, unknown
81.7
2823
Male, age 76, right hemisphere
68.8
Substantia nigra nTPM: 149.8
1916
Female, age 42, unknown
189.7
1941
Male, age 53, unknown
189.0
1889
Female, age 72, unknown
178.2
1851
Male, age 51, unknown
172.2
2241
Male, age 72, unknown
148.9
2583
Male, age 75, right hemisphere
141.7
2699
Male, age 18, unknown
134.1
2590
Female, age 75, unknown
126.6
2665
Male, age 74, both hemispheres
115.1
2409
Female, age 72, unknown
102.0
Superior colliculus nTPM: 153.3
2261
Male, age 18, unknown
200.8
1796
Male, age 53, unknown
189.2
2664
Male, age 75, both hemispheres
174.6
1839
Male, age 51, unknown
161.2
2087
Female, age 72, unknown
158.7
2668
Female, age 75, unknown
149.8
2587
Male, age 74, left hemisphere
143.9
1895
Male, age 76, right hemisphere
139.5
1913
Female, age 42, unknown
115.0
1995
Male, age 72, unknown
100.3
Ventral tegmental area nTPM: 176.4
1915
Female, age 42, unknown
180.8
1942
Male, age 51, unknown
180.3
2021
Male, age 53, unknown
176.8
2223
Female, age 72, unknown
175.6
2218
Male, age 76, both hemispheres
174.7
2410
Female, age 72, unknown
170.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
72.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 72.7
Samples: 139
Max nTPM: 403.7
Min nTPM: 7.6
Std nTPM: 67.8
Median nTPM: 48.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
403.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
395.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
250.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
238.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
233.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
225.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
223.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
213.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
207.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
189.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
181.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
173.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
171.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
164.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
162.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
161.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
151.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
150.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
147.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
147.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
142.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
132.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
123.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
122.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
120.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
110.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
102.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
101.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
94.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
93.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
93.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
92.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
92.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
92.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
89.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
89.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
87.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
86.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
85.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
81.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
78.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
78.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
77.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
72.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
71.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
70.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
69.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
67.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
67.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
66.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
65.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
63.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
62.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
62.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
60.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
58.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
57.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
56.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
56.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
55.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
54.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
54.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
53.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
52.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
52.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
51.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
50.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
49.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
49.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
48.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
48.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
48.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
48.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
47.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
47.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
46.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
44.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
44.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
43.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
42.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
42.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
41.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
40.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
39.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
38.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
38.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
37.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
35.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
34.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
34.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
34.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
33.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
33.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
33.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
32.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
32.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
32.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
31.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
31.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
31.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
31.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
30.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
30.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
29.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
29.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
28.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
27.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
26.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
26.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
26.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
25.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
25.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
25.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
24.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
23.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
23.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
23.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
23.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
22.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
22.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
21.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
21.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
21.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
21.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
19.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
19.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
18.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
18.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
18.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
18.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
17.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
17.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
17.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
16.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
15.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
14.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
14.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
14.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
7.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
620.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 620.1
Samples: 4
Max nTPM: 633.0
Min nTPM: 605.2
Sample A
Male
618.9
Sample B
Male
623.2
Sample C
Female
605.2
Sample D
Female
633.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.