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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
125.8
nTPM
HPA Brain:
437.8
nTPM
GTEx:
125.8
nTPM
FANTOM5:
544.7
Scaled Tags Per Million
Pig:
247.9
nTPM
Mouse:
1020.6
nTPM
Allen mouse:
29.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA044249
Antibody CAB002745
Glial cells
Not detected
Not detected
Neuronal cells
Low
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
437.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 187.7
1898
Male, age 80, left hemisphere
310.4
1855
Male, age 76, left hemisphere
189.5
2621
Female, age 67, right hemisphere
184.9
1911
Female, age 85, right hemisphere
178.9
2148
Female, age 91, left hemisphere
131.8
2529
Female, age 94, left hemisphere
130.8
Dentate gyrus nTPM: 204.2
1927
Female, age 91, both hemispheres
297.4
2010
Male, age 76, both hemispheres
217.3
2246
Female, age 85, both hemispheres
210.5
2531
Female, age 67, both hemispheres
204.2
2530
Female, age 94, left hemisphere
149.0
2528
Male, age 74, both hemispheres
147.0
Entorhinal gyrus nTPM: 289.4
2764
Male, age 80, right hemisphere
396.9
2613
Female, age 94, left hemisphere
359.6
1938
Female, age 85, left hemisphere
355.0
1787
Male, age 76, left hemisphere
306.3
2686
Male, age 75, right hemisphere
178.4
2117
Female, age 91, right hemisphere
140.0
Hippocampus, CA1 nTPM: 266.1
2749
Male, age 80, left hemisphere
503.2
2045
Male, age 76, both hemispheres
255.5
1873
Female, age 85, both hemispheres
221.4
2527
Male, age 74, both hemispheres
184.5
2082
Female, age 91, right hemisphere
165.9
Hippocampus, CA2 nTPM: 224.3
1892
Male, age 76, both hemispheres
330.8
1963
Male, age 80, left hemisphere
251.5
1940
Female, age 85, left hemisphere
213.0
2249
Male, age 74, both hemispheres
197.9
2437
Female, age 94, left hemisphere
197.9
2113
Female, age 91, right hemisphere
154.8
Hippocampus, CA3 nTPM: 255.4
2137
Male, age 80, left hemisphere
418.3
1867
Male, age 76, both hemispheres
298.2
2620
Female, age 94, left hemisphere
272.1
1891
Female, age 85, both hemispheres
225.7
2436
Male, age 74, both hemispheres
172.5
2861
Female, age 67, both hemispheres
145.4
Parahippocampal cortex nTPM: 293.3
1850
Male, age 80, both hemispheres
447.8
1990
Female, age 91, right hemisphere
360.6
2693
Female, age 94, both hemispheres
354.7
1933
Female, age 85, both hemispheres
316.2
2245
Female, age 91, both hemispheres
286.7
2532
Female, age 72, left hemisphere
285.0
2018
Male, age 76, both hemispheres
282.1
2250
Female, age 67, right hemisphere
250.1
2622
Female, age 67, right hemisphere
196.7
2692
Male, age 74, both hemispheres
153.6
Perirhinal gyrus nTPM: 437.8
1847
Female, age 91, left hemisphere
566.2
1794
Male, age 80, right hemisphere
491.7
1841
Female, age 85, right hemisphere
421.0
2521
Female, age 94, right hemisphere
376.7
2848
Male, age 76, right hemisphere
333.4
Subiculum nTPM: 230.6
1977
Female, age 85, both hemispheres
356.9
1901
Male, age 80, both hemispheres
322.7
2438
Female, age 94, left hemisphere
217.8
2042
Male, age 76, both hemispheres
209.8
2619
Male, age 74, both hemispheres
167.0
2729
Female, age 91, right hemisphere
109.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
125.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 125.8
Samples: 197
Max nTPM: 517.1
Min nTPM: 5.2
Std nTPM: 103.2
Median nTPM: 92.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
517.1
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
482.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
424.1
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
390.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
379.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
376.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
373.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
371.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
370.9
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
353.4
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
350.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
343.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
336.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
318.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
311.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
308.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
305.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
292.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
290.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
290.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
288.6
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
277.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
276.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
276.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
263.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
260.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
253.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
247.3
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
247.0
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
241.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
240.8
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
238.0
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
237.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
229.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
219.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
217.7
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
215.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
208.8
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
199.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
198.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
196.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
195.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
192.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
191.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
189.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
182.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
181.3
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
170.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
164.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
162.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
160.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
158.0
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
156.5
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
156.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
156.0
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
155.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
148.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
148.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
145.1
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
144.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
142.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
139.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
138.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
132.8
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
132.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
131.1
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
127.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
124.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
122.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
121.8
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
121.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
119.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
119.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
117.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
115.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
113.4
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
112.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
111.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
110.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
107.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
107.1
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
106.7
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
106.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
106.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
105.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
105.5
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
103.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
103.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
103.1
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
103.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
102.6
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
102.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
100.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
95.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
95.7
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
94.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
93.4
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
93.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
92.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
92.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
91.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
90.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
88.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
88.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
88.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
85.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
84.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
83.5
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
83.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
82.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
81.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
80.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
79.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
79.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
78.7
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
76.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
75.6
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
75.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
74.9
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
74.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
74.3
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
72.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
72.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
72.4
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
71.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
70.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
69.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
69.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
67.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
67.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
66.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
66.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
64.1
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
62.4
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
61.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
60.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
59.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
59.7
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
58.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
58.2
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
58.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
56.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
55.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
54.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
54.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
53.6
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
53.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
52.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
50.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
48.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
47.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
47.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
46.8
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
46.2
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
45.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
43.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
42.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
42.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
41.8
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
41.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
41.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
41.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
41.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
39.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
39.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
36.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
34.6
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
34.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
33.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
33.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
33.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
31.0
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
31.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
30.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
29.3
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
29.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
29.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
28.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
28.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
27.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
25.8
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
25.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
25.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
24.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
22.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
21.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
20.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
20.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
17.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
17.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
16.3
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
15.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
15.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
11.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
11.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
9.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
5.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1020.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 1020.6
Samples: 4
Max nTPM: 1222.1
Min nTPM: 904.7
Sample A
Male
904.7
Sample B
Male
1012.3
Sample C
Female
943.2
Sample D
Female
1222.1
Hippocampal formation nTPM: 1004.0
Samples: 4
Max nTPM: 1043.9
Min nTPM: 943.9
Sample A
Male
943.9
Sample B
Male
1043.9
Sample C
Female
1037.3
Sample D
Female
990.9
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.