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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
125.8
nTPM
HPA Brain:
66.8
nTPM
GTEx:
125.8
nTPM
FANTOM5:
104.3
Scaled Tags Per Million
Pig:
18.5
nTPM
Mouse:
65.6
nTPM
Allen mouse:
0.0
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 54.7
2666
Male, age 74, left hemisphere
64.9
1870
Female, age 42, unknown
64.6
1830
Male, age 51, unknown
58.1
2828
Female, age 72, unknown
57.1
1833
Male, age 53, unknown
56.4
1827
Male, age 72, unknown
55.0
2019
Male, age 18, unknown
50.2
2411
Female, age 72, unknown
48.5
2586
Male, age 75, left hemisphere
47.7
2219
Male, age 76, both hemispheres
44.1
Dorsal raphe nucleus nTPM: 53.6
2016
Female, age 72, unknown
67.8
2750
Male, age 76, both hemispheres
56.4
1828
Male, age 53, unknown
53.2
2298
Female, age 72, unknown
46.6
2047
Male, age 72, unknown
43.8
Inferior colliculus nTPM: 47.5
2849
Male, age 72, unknown
54.2
1848
Female, age 42, unknown
50.5
1890
Male, age 53, unknown
44.4
2097
Female, age 72, unknown
41.1
Median raphe nucleus nTPM: 53.9
2220
Male, age 76, midline
53.9
Periaquaductal grey, anterior nTPM: 51.8
2502
Female, age 75, unknown
54.1
1947
Male, age 18, unknown
52.7
1795
Male, age 51, unknown
48.5
Periaquaductal grey, dorsal nTPM: 54.7
2850
Male, age 76, both hemispheres
68.8
1831
Male, age 72, unknown
58.3
1840
Male, age 53, unknown
48.2
2464
Female, age 72, unknown
43.6
Periaquaductal grey, lateral nTPM: 56.4
2053
Male, age 18, unknown
62.2
2140
Male, age 76, both hemispheres
55.8
2272
Male, age 74, both hemispheres
51.2
Pretectal area nTPM: 51.5
1815
Male, age 53, unknown
60.6
2273
Male, age 74, both hemispheres
58.3
2224
Female, age 72, unknown
54.5
2825
Male, age 18, unknown
53.7
1816
Male, age 51, unknown
53.4
2407
Male, age 75, both hemispheres
51.9
1817
Female, age 42, unknown
51.7
1944
Female, age 72, unknown
50.1
2007
Male, age 72, unknown
49.5
2316
Male, age 76, right hemisphere
43.9
2667
Female, age 75, unknown
38.7
Red nucleus nTPM: 66.8
2725
Female, age 75, unknown
86.5
2503
Female, age 72, unknown
84.4
1865
Male, age 51, unknown
72.7
1954
Female, age 42, unknown
72.3
1821
Female, age 72, unknown
71.0
2588
Male, age 74, left hemisphere
70.4
1904
Male, age 53, unknown
63.9
2823
Male, age 76, right hemisphere
63.6
2227
Male, age 72, unknown
61.5
2769
Male, age 72, unknown
56.6
2785
Male, age 18, unknown
54.5
2584
Male, age 75, left hemisphere
43.8
Substantia nigra nTPM: 51.8
2409
Female, age 72, unknown
59.6
2699
Male, age 18, unknown
58.1
2665
Male, age 74, both hemispheres
55.1
1889
Female, age 72, unknown
52.7
2590
Female, age 75, unknown
52.5
1941
Male, age 53, unknown
51.2
1851
Male, age 51, unknown
49.8
1916
Female, age 42, unknown
49.6
2241
Male, age 72, unknown
48.0
2583
Male, age 75, right hemisphere
41.2
Superior colliculus nTPM: 53.4
1995
Male, age 72, unknown
69.7
2587
Male, age 74, left hemisphere
67.2
1913
Female, age 42, unknown
63.3
1839
Male, age 51, unknown
52.1
2261
Male, age 18, unknown
51.4
1796
Male, age 53, unknown
50.2
2668
Female, age 75, unknown
49.4
2664
Male, age 75, both hemispheres
44.3
2087
Female, age 72, unknown
44.2
1895
Male, age 76, right hemisphere
42.3
Ventral tegmental area nTPM: 54.1
2223
Female, age 72, unknown
73.3
2021
Male, age 53, unknown
55.9
2218
Male, age 76, both hemispheres
50.2
1915
Female, age 42, unknown
49.5
1942
Male, age 51, unknown
48.2
2410
Female, age 72, unknown
47.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
125.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 125.8
Samples: 139
Max nTPM: 342.1
Min nTPM: 49.9
Std nTPM: 51.5
Median nTPM: 113.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
342.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
296.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
261.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
259.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
254.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
241.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
236.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
226.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
216.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
209.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
208.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
205.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
197.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
195.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
195.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
194.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
187.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
186.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
184.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
183.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
181.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
180.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
164.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
164.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
164.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
163.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
161.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
159.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
158.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
157.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
156.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
155.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
154.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
154.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
153.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
147.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
146.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
146.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
146.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
143.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
142.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
142.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
141.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
141.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
138.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
137.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
135.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
133.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
133.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
131.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
130.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
130.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
129.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
128.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
128.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
125.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
125.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
125.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
121.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
121.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
120.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
120.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
119.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
118.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
116.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
115.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
114.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
113.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
113.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
113.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
112.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
112.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
112.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
110.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
109.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
108.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
107.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
107.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
106.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
105.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
105.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
105.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
105.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
104.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
103.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
102.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
101.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
99.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
98.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
98.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
97.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
97.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
96.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
96.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
95.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
95.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
93.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
93.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
89.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
89.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
88.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
88.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
88.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
87.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
86.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
86.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
85.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
85.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
84.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
84.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
83.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
83.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
82.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
82.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
81.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
80.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
79.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
79.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
78.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
76.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
76.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
75.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
75.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
73.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
72.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
72.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
72.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
72.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
71.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
71.2
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
70.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
69.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
68.9
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
67.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
64.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
60.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
58.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
56.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
49.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
65.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 65.6
Samples: 4
Max nTPM: 68.5
Min nTPM: 63.3
Sample A
Male
68.5
Sample B
Male
64.8
Sample C
Female
65.9
Sample D
Female
63.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.