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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.1
Sample id
Sample description
nTPM
Amygdala nTPM: 9.7
2517
Female, age 94, left hemisphere
21.9
2514
Male, age 75, right hemisphere
9.0
1987
Female, age 91, left hemisphere
8.0
2695
Female, age 67, right hemisphere
6.0
2814
Male, age 76, right hemisphere
3.5
Basal amygdala nTPM: 24.1
2110
Male, age 80, left hemisphere
35.5
2243
Female, age 91, right hemisphere
25.6
2685
Female, age 94, left hemisphere
24.4
2827
Female, age 67, right hemisphere
23.8
2609
Male, age 75, right hemisphere
20.0
1955
Male, age 76, both hemispheres
15.7
Central amygdala nTPM: 10.8
2239
Male, age 80, left hemisphere
19.0
2826
Female, age 94, left hemisphere
18.5
2515
Male, age 75, right hemisphere
9.7
2701
Female, age 91, right hemisphere
5.0
1905
Male, age 76, both hemispheres
1.9
Corticomedial amygdala nTPM: 22.7
2535
Female, age 67, right hemisphere
37.5
2829
Male, age 80, left hemisphere
34.3
2242
Female, age 91, right hemisphere
18.2
2429
Female, age 94, left hemisphere
17.2
2428
Male, age 75, right hemisphere
15.6
2240
Male, age 76, both hemispheres
13.2
Lateral amygdala nTPM: 14.0
2534
Female, age 94, left hemisphere
27.4
2256
Male, age 80, left hemisphere
20.7
2516
Male, age 75, right hemisphere
11.2
2830
Female, age 67, right hemisphere
10.3
1883
Male, age 76, both hemispheres
7.5
2255
Female, age 91, right hemisphere
7.2
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
28.0
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 28.0
Samples: 152
Max nTPM: 99.6
Min nTPM: 1.4
Std nTPM: 16.5
Median nTPM: 26.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
99.6
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
73.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
73.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
72.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
69.3
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
69.1
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
63.3
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
57.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
57.8
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
55.8
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
53.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
51.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
51.0
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
50.9
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
50.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
50.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
48.7
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
48.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
47.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
47.1
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
46.9
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
46.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
45.2
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
45.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
43.2
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
42.5
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
42.4
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
41.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
41.1
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
40.3
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
40.1
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
40.1
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
38.7
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
38.7
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
38.6
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
38.0
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
36.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
36.6
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
36.3
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
35.5
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
35.5
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
35.2
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
34.1
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
33.5
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
33.4
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
33.2
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
32.8
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
32.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
32.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
31.8
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
31.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
31.5
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
31.3
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
31.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
30.3
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
30.3
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
30.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
29.9
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
29.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
29.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
29.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
29.0
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
28.7
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
28.3
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
28.2
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
27.8
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
27.7
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
27.3
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
27.3
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
27.1
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
27.0
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
26.7
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
26.5
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
26.4
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
26.2
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
26.0
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
25.9
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
25.6
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
25.4
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
25.2
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
24.3
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
23.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
22.8
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
22.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
21.9
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
21.9
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
21.9
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
21.8
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
21.6
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
20.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
20.6
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
20.3
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
20.1
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
20.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
19.9
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
19.8
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
19.8
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
19.4
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
19.1
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
19.1
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
18.6
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
18.3
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
18.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
18.2
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
18.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
17.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
17.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
17.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
17.1
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
16.4
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
16.2
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
16.1
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
16.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
15.7
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
15.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
15.7
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
15.6
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
15.0
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
14.9
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
13.9
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
13.9
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
13.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
13.7
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
13.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
13.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
13.5
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
13.4
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
12.9
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
12.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
12.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
12.2
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
11.6
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
11.5
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
11.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
11.2
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
10.6
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
10.0
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
9.5
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
9.2
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
9.2
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
9.1
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
8.9
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
8.9
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
8.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
8.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
7.4
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
7.0
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
6.3
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
6.1
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
4.8
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
3.4
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
1.4
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
116.7
Mouse sample
Sample description
nTPM
Amygdala nTPM: 116.7
Samples: 4
Max nTPM: 124.5
Min nTPM: 110.9
Sample A
Male
110.9
Sample B
Male
124.5
Sample C
Female
118.9
Sample D
Female
112.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.