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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
22.5
nTPM
HPA Brain:
95.6
nTPM
GTEx:
22.5
nTPM
FANTOM5:
2.9
Scaled Tags Per Million
Pig:
20.7
nTPM
Mouse:
34.6
nTPM
Allen mouse:
0.2
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
95.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 25.4
2219
Male, age 76, both hemispheres
102.5
1833
Male, age 53, unknown
24.1
2586
Male, age 75, left hemisphere
23.8
2019
Male, age 18, unknown
21.2
1830
Male, age 51, unknown
19.8
2411
Female, age 72, unknown
15.3
1870
Female, age 42, unknown
14.6
1827
Male, age 72, unknown
14.0
2828
Female, age 72, unknown
11.6
2666
Male, age 74, left hemisphere
7.4
Dorsal raphe nucleus nTPM: 14.0
2016
Female, age 72, unknown
21.7
1828
Male, age 53, unknown
15.3
2047
Male, age 72, unknown
12.5
2298
Female, age 72, unknown
11.5
2750
Male, age 76, both hemispheres
8.8
Inferior colliculus nTPM: 41.6
2097
Female, age 72, unknown
50.2
2849
Male, age 72, unknown
44.1
1848
Female, age 42, unknown
42.1
1890
Male, age 53, unknown
30.1
Median raphe nucleus nTPM: 9.4
2220
Male, age 76, midline
9.4
Periaquaductal grey, anterior nTPM: 23.2
2502
Female, age 75, unknown
48.2
1947
Male, age 18, unknown
11.5
1795
Male, age 51, unknown
9.9
Periaquaductal grey, dorsal nTPM: 17.5
2464
Female, age 72, unknown
26.2
1840
Male, age 53, unknown
22.6
2850
Male, age 76, both hemispheres
10.7
1831
Male, age 72, unknown
10.5
Periaquaductal grey, lateral nTPM: 11.4
2053
Male, age 18, unknown
14.8
2140
Male, age 76, both hemispheres
13.6
2272
Male, age 74, both hemispheres
5.7
Pretectal area nTPM: 18.5
1944
Female, age 72, unknown
32.4
1816
Male, age 51, unknown
25.2
2316
Male, age 76, right hemisphere
23.3
2407
Male, age 75, both hemispheres
20.5
1817
Female, age 42, unknown
18.2
2007
Male, age 72, unknown
17.3
2825
Male, age 18, unknown
16.5
1815
Male, age 53, unknown
16.4
2667
Female, age 75, unknown
14.9
2224
Female, age 72, unknown
13.7
2273
Male, age 74, both hemispheres
5.3
Red nucleus nTPM: 18.6
1821
Female, age 72, unknown
26.0
2769
Male, age 72, unknown
23.8
2227
Male, age 72, unknown
22.5
1865
Male, age 51, unknown
19.6
1904
Male, age 53, unknown
19.6
2503
Female, age 72, unknown
19.1
1954
Female, age 42, unknown
18.8
2785
Male, age 18, unknown
16.9
2584
Male, age 75, left hemisphere
16.0
2823
Male, age 76, right hemisphere
16.0
2725
Female, age 75, unknown
13.3
2588
Male, age 74, left hemisphere
12.2
Substantia nigra nTPM: 95.6
1916
Female, age 42, unknown
170.2
2241
Male, age 72, unknown
139.0
1941
Male, age 53, unknown
112.2
2665
Male, age 74, both hemispheres
111.6
1851
Male, age 51, unknown
102.9
2699
Male, age 18, unknown
100.6
2409
Female, age 72, unknown
71.6
2590
Female, age 75, unknown
58.6
2583
Male, age 75, right hemisphere
55.1
1889
Female, age 72, unknown
34.6
Superior colliculus nTPM: 20.8
1895
Male, age 76, right hemisphere
40.0
2087
Female, age 72, unknown
32.0
1839
Male, age 51, unknown
20.0
2261
Male, age 18, unknown
19.3
2587
Male, age 74, left hemisphere
18.3
2664
Male, age 75, both hemispheres
17.8
2668
Female, age 75, unknown
17.0
1796
Male, age 53, unknown
16.2
1995
Male, age 72, unknown
15.4
1913
Female, age 42, unknown
12.1
Ventral tegmental area nTPM: 61.4
2218
Male, age 76, both hemispheres
94.3
1915
Female, age 42, unknown
88.4
2410
Female, age 72, unknown
87.5
1942
Male, age 51, unknown
47.2
2021
Male, age 53, unknown
33.1
2223
Female, age 72, unknown
17.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
22.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 22.5
Samples: 139
Max nTPM: 125.4
Min nTPM: 0.1
Std nTPM: 22.5
Median nTPM: 15.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
125.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
102.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
76.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
72.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
71.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
70.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
70.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
67.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
63.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
57.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
56.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
56.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
55.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
53.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
52.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
49.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
48.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
46.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
46.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
45.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
45.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
45.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
44.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
44.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
43.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
42.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
42.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
41.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
41.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
40.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
40.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
37.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
37.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
37.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
36.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
34.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
33.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
33.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
33.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
33.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
32.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
32.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
31.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
28.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
27.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
26.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
26.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
26.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
24.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
24.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
23.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
23.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
22.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
22.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
22.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
22.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
21.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
21.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
20.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
19.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
19.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
18.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
18.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
18.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
17.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
16.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
15.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
15.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
15.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
15.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
15.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
14.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
14.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
13.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
13.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
13.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
13.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
13.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
12.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
12.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
11.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
11.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
10.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
10.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
10.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
9.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
9.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
8.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
8.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
8.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
8.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
8.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
7.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
6.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
6.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
6.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
6.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
6.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
5.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
5.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
4.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
4.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
4.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
3.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
3.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
3.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
3.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
3.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
3.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
2.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
2.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
2.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
2.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
2.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
2.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
2.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
2.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
2.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
2.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
2.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
2.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
0.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
0.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
0.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
0.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
0.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
0.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
0.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
0.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
0.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 34.6
Samples: 4
Max nTPM: 39.2
Min nTPM: 32.4
Sample A
Male
32.4
Sample B
Male
39.2
Sample C
Female
33.5
Sample D
Female
33.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.