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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
31.4
nTPM
HPA Brain:
12.9
nTPM
GTEx:
31.4
nTPM
FANTOM5:
92.7
Scaled Tags Per Million
Pig:
66.8
nTPM
Mouse:
63.9
nTPM
Allen mouse:
0.9
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 11.1
1870
Female, age 42, unknown
14.3
2219
Male, age 76, both hemispheres
12.8
1833
Male, age 53, unknown
11.6
2828
Female, age 72, unknown
11.6
2586
Male, age 75, left hemisphere
11.3
1827
Male, age 72, unknown
11.1
2666
Male, age 74, left hemisphere
11.0
2411
Female, age 72, unknown
10.9
1830
Male, age 51, unknown
8.4
2019
Male, age 18, unknown
8.4
Dorsal raphe nucleus nTPM: 11.4
2298
Female, age 72, unknown
15.0
1828
Male, age 53, unknown
10.9
2047
Male, age 72, unknown
10.8
2750
Male, age 76, both hemispheres
10.1
2016
Female, age 72, unknown
10.0
Inferior colliculus nTPM: 12.0
2849
Male, age 72, unknown
13.1
1848
Female, age 42, unknown
12.8
2097
Female, age 72, unknown
11.6
1890
Male, age 53, unknown
10.8
Median raphe nucleus nTPM: 12.3
2220
Male, age 76, midline
12.3
Periaquaductal grey, anterior nTPM: 12.9
1947
Male, age 18, unknown
15.5
2502
Female, age 75, unknown
12.2
1795
Male, age 51, unknown
11.0
Periaquaductal grey, dorsal nTPM: 11.1
1840
Male, age 53, unknown
12.7
2850
Male, age 76, both hemispheres
12.7
1831
Male, age 72, unknown
10.0
2464
Female, age 72, unknown
9.2
Periaquaductal grey, lateral nTPM: 10.5
2140
Male, age 76, both hemispheres
11.6
2053
Male, age 18, unknown
10.2
2272
Male, age 74, both hemispheres
9.8
Pretectal area nTPM: 12.6
2224
Female, age 72, unknown
13.9
2316
Male, age 76, right hemisphere
13.9
2007
Male, age 72, unknown
13.5
1816
Male, age 51, unknown
13.3
1817
Female, age 42, unknown
13.1
2825
Male, age 18, unknown
13.1
1815
Male, age 53, unknown
13.0
2667
Female, age 75, unknown
12.8
1944
Female, age 72, unknown
12.2
2407
Male, age 75, both hemispheres
10.5
2273
Male, age 74, both hemispheres
8.7
Red nucleus nTPM: 12.4
2503
Female, age 72, unknown
15.8
1821
Female, age 72, unknown
15.2
1865
Male, age 51, unknown
15.1
2725
Female, age 75, unknown
13.7
2227
Male, age 72, unknown
12.8
2769
Male, age 72, unknown
12.7
1954
Female, age 42, unknown
11.3
2785
Male, age 18, unknown
11.3
2588
Male, age 74, left hemisphere
10.5
2584
Male, age 75, left hemisphere
10.4
1904
Male, age 53, unknown
10.2
2823
Male, age 76, right hemisphere
9.9
Substantia nigra nTPM: 12.2
1851
Male, age 51, unknown
14.4
1889
Female, age 72, unknown
14.4
1916
Female, age 42, unknown
14.3
1941
Male, age 53, unknown
13.5
2665
Male, age 74, both hemispheres
12.5
2241
Male, age 72, unknown
12.3
2699
Male, age 18, unknown
11.6
2583
Male, age 75, right hemisphere
11.2
2590
Female, age 75, unknown
10.9
2409
Female, age 72, unknown
6.5
Superior colliculus nTPM: 11.5
2261
Male, age 18, unknown
13.3
1913
Female, age 42, unknown
12.6
1796
Male, age 53, unknown
12.4
2587
Male, age 74, left hemisphere
12.4
2087
Female, age 72, unknown
11.4
2668
Female, age 75, unknown
11.4
1839
Male, age 51, unknown
10.9
2664
Male, age 75, both hemispheres
10.9
1995
Male, age 72, unknown
9.9
1895
Male, age 76, right hemisphere
9.5
Ventral tegmental area nTPM: 12.5
2223
Female, age 72, unknown
14.9
2218
Male, age 76, both hemispheres
13.3
1942
Male, age 51, unknown
12.4
2410
Female, age 72, unknown
11.8
1915
Female, age 42, unknown
11.3
2021
Male, age 53, unknown
11.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
31.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 31.4
Samples: 139
Max nTPM: 65.2
Min nTPM: 10.7
Std nTPM: 8.5
Median nTPM: 30.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
65.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
58.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
55.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
55.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
55.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
51.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
47.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
47.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
45.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
44.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
44.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
43.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
42.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
41.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
41.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
40.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
40.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
39.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
39.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
39.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
39.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
38.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
36.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
36.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
36.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
36.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
36.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
36.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
35.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
35.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
35.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
35.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
34.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
34.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
34.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
34.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
34.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
34.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
33.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
33.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
33.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
33.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
33.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
33.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
33.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
33.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
33.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
33.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
32.9
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
32.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
32.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
32.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
32.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
32.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
32.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
32.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
32.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
32.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
32.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
31.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
31.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
31.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
31.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
31.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
31.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
31.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
31.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
30.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
30.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
30.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
30.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
30.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
30.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
30.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
30.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
29.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
29.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
29.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
29.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
29.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
29.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
29.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
29.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
29.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
29.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
28.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
28.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
28.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
28.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
28.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
28.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
28.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
27.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
27.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
27.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
27.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
27.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
27.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
27.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
27.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
27.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
26.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
26.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
26.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
26.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
26.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
26.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
25.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
25.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
25.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
25.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
25.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
25.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
25.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
25.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
24.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
24.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
24.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
24.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
24.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
23.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
22.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
22.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
22.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
22.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
21.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
21.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
21.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
21.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
20.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
20.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
19.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
17.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
17.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
16.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
16.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
16.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
13.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
10.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
63.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 63.9
Samples: 4
Max nTPM: 67.0
Min nTPM: 60.5
Sample A
Male
62.9
Sample B
Male
67.0
Sample C
Female
60.5
Sample D
Female
65.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.