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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACTL6A is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
91.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
75.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
64.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
47.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
43.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
40.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
37.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
35.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
32.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
32.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
31.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
31.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
30.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
28.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
28.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
26.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
25.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACTL6A is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.6
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
64.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
63.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
60.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
57.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
52.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
45.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
38.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
32.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
31.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
31.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
30.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
27.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
27.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
27.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
27.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
23.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.1
497
Tumor
0.9
877
Tumor
0.9
965
Tumor
0.8
983
Tumor
0.8
967
Tumor
0.7
131
Tumor
0.7
813
Tumor
0.7
545
Tumor
0.7
724
Normal
0.7
285
Tumor
0.6
283
Tumor
0.6
331
Tumor
0.6
814
Normal
0.6
661
Tumor
0.6
737
Tumor
0.5
277
Tumor
0.5
951
Tumor
0.5
671
Tumor
0.5
463
Tumor
0.5
411
Tumor
0.5
211
Tumor
0.5
663
Tumor
0.5
977
Tumor
0.5
535
Tumor
0.5
161
Tumor
0.5
921
Tumor
0.5
881
Tumor
0.5
695
Tumor
0.5
777
Tumor
0.5
447
Tumor
0.4
487
Tumor
0.4
865
Tumor
0.4
425
Tumor
0.4
537
Tumor
0.4
527
Tumor
0.4
493
Tumor
0.4
975
Tumor
0.4
367
Tumor
0.4
533
Tumor
0.4
1013
Tumor
0.4
351
Tumor
0.4
817
Tumor
0.4
297
Tumor
0.4
917
Tumor
0.4
123
Tumor
0.4
963
Tumor
0.3
112
Tumor
0.3
271
Tumor
0.3
883
Tumor
0.3
385
Tumor
0.3
375
Tumor
0.3
727
Tumor
0.3
536
Normal
0.3
721
Tumor
0.3
641
Tumor
0.3
943
Tumor
0.3
413
Tumor
0.3
483
Tumor
0.3
815
Tumor
0.3
1031
Tumor
0.3
433
Tumor
0.3
383
Tumor
0.2
427
Tumor
0.2
1021
Tumor
0.2
685
Tumor
0.2
311
Tumor
0.2
355
Tumor
0.2
647
Tumor
0.2
937
Tumor
0.2
224
Normal
0.2
473
Tumor
0.2
863
Tumor
0.2
491
Tumor
0.2
957
Tumor
0.2
715
Tumor
0.2
217
Tumor
0.2
443
Tumor
0.2
343
Tumor
0.2
553
Tumor
0.2
461
Tumor
0.2
567
Tumor
0.2
192
Normal
0.2
467
Tumor
0.2
415
Tumor
0.2
313
Tumor
0.2
445
Tumor
0.2
517
Tumor
0.2
341
Tumor
0.2
478
Normal
0.2
523
Tumor
0.2
431
Tumor
0.2
213
Tumor
0.1
185
Tumor
0.1
741
Tumor
0.1
1015
Tumor
0.1
538
Normal
0.1
525
Tumor
0.1
498
Normal
0.1
492
Normal
0.1
221
Tumor
0.1
563
Tumor
0.1
363
Tumor
0.1
227
Tumor
0.1
171
Tumor
0.1
395
Tumor
0.1
141
Tumor
0.1
444
Normal
0.1
573
Tumor
0.1
391
Tumor
0.1
125
Tumor
0.1
455
Tumor
0.1
953
Tumor
0.1
911
Tumor
0.1
744
Normal
0.1
923
Tumor
0.1
231
Tumor
0.1
267
Tumor
0.1
223
Tumor
0.1
785
Tumor
0.1
471
Tumor
0.0
421
Tumor
0.0
387
Tumor
0.0
665
Tumor
0.0
723
Tumor
0.0
913
Tumor
0.0
268
Normal
0.0
713
Tumor
0.0
1043
Tumor
0.0
434
Normal
0.0
212
Normal
0.0
284
Normal
0.0
228
Normal
0.0
477
Tumor
0.0
147
Tumor
0.0
515
Tumor
0.0
435
Tumor
0.0
327
Tumor
0.0
191
Tumor
0.0
916
Normal
0.0
857
Tumor
0.0
884
Normal
0.0
873
Tumor
0.0
861
Tumor
0.0
488
Normal
0.0
127
Tumor
0.0
1025
Tumor
0.0
672
Normal
0.0
344
Normal
0.0
852
Normal
0.0
195
Tumor
0.0
446
Normal
0.0
314
Normal
0.0
258
Normal
0.0
286
Normal
0.0
126
Normal
0.0
135
Tumor
-0.1
113
Tumor
-0.1
432
Normal
-0.1
867
Tumor
-0.1
357
Tumor
-0.1
823
Tumor
-0.1
386
Normal
-0.1
686
Normal
-0.1
124
Normal
-0.1
958
Normal
-0.1
617
Tumor
-0.1
778
Normal
-0.1
1041
Tumor
-0.1
554
Normal
-0.1
262
Normal
-0.1
912
Normal
-0.1
1027
Tumor
-0.1
978
Normal
-0.1
423
Tumor
-0.1
557
Tumor
-0.1
966
Normal
-0.1
187
Tumor
-0.1
716
Normal
-0.1
436
Normal
-0.1
524
Normal
-0.1
358
Normal
-0.1
546
Normal
-0.1
465
Tumor
-0.1
451
Tumor
-0.1
571
Tumor
-0.1
278
Normal
-0.1
984
Normal
-0.1
742
Normal
-0.1
188
Normal
-0.1
738
Normal
-0.1
412
Normal
-0.1
298
Normal
-0.1
878
Normal
-0.1
662
Normal
-0.1
874
Normal
-0.1
534
Normal
-0.1
481
Tumor
-0.1
494
Normal
-0.1
976
Normal
-0.1
528
Normal
-0.1
352
Normal
-0.1
272
Normal
-0.1
137
Tumor
-0.1
635
Tumor
-0.1
868
Normal
-0.1
1045
Tumor
-0.1
824
Normal
-0.1
462
Normal
-0.1
858
Normal
-0.1
786
Normal
-0.1
196
Normal
-0.1
915
Tumor
-0.1
925
Tumor
-0.1
332
Normal
-0.1
964
Normal
-0.1
354
Normal
-0.1
664
Normal
-0.1
516
Normal
-0.1
484
Normal
-0.1
1028
Normal
-0.1
918
Normal
-0.1
818
Normal
-0.1
472
Normal
-0.1
312
Normal
-0.1
384
Normal
-0.1
365
Tumor
-0.1
392
Normal
-0.1
851
Tumor
-0.1
666
Normal
-0.1
513
Tumor
-0.2
816
Normal
-0.2
1044
Normal
-0.2
954
Normal
-0.2
364
Normal
-0.2
361
Tumor
-0.2
755
Tumor
-0.2
882
Normal
-0.2
746
Normal
-0.2
697
Tumor
-0.2
146
Normal
-0.2
745
Tumor
-0.2
756
Normal
-0.2
328
Normal
-0.2
696
Normal
-0.2
353
Tumor
-0.2
864
Normal
-0.2
232
Normal
-0.2
416
Normal
-0.2
924
Normal
-0.2
862
Normal
-0.2
114
Normal
-0.2
474
Normal
-0.2
368
Normal
-0.2
914
Normal
-0.2
424
Normal
-0.2
1016
Normal
-0.2
968
Normal
-0.2
558
Normal
-0.2
722
Normal
-0.2
356
Normal
-0.2
257
Tumor
-0.2
944
Normal
-0.2
728
Normal
-0.2
456
Normal
-0.2
574
Normal
-0.2
142
Normal
-0.2
982
Normal
-0.2
1022
Normal
-0.2
422
Normal
-0.2
714
Normal
-0.2
396
Normal
-0.2
448
Normal
-0.2
218
Normal
-0.2
261
Tumor
-0.2
615
Tumor
-0.2
376
Normal
-0.2
366
Normal
-0.2
866
Normal
-0.2
981
Tumor
-0.2
926
Normal
-0.2
955
Tumor
-0.2
1026
Normal
-0.2
572
Normal
-0.3
938
Normal
-0.3
628
Normal
-0.3
388
Normal
-0.3
627
Tumor
-0.3
1032
Normal
-0.3
342
Normal
-0.3
648
Normal
-0.3
362
Normal
-0.3
186
Normal
-0.3
1014
Normal
-0.3
464
Normal
-0.3
394
Normal
-0.3
526
Normal
-0.3
145
Tumor
-0.3
1046
Normal
-0.3
138
Normal
-0.3
922
Normal
-0.3
214
Normal
-0.3
564
Normal
-0.3
482
Normal
-0.3
452
Normal
-0.3
952
Normal
-0.3
414
Normal
-0.3
466
Normal
-0.3
468
Normal
-0.3
426
Normal
-0.3
1042
Normal
-0.3
172
Normal
-0.3
222
Normal
-0.3
162
Normal
-0.3
956
Normal
-0.3
148
Normal
-0.3
518
Normal
-0.3
636
Normal
-0.3
642
Normal
-0.3
111
Normal
-0.3
128
Normal
-0.3
393
Tumor
-0.3
514
Normal
-0.3
136
Normal
-0.4
568
Normal
-0.4
698
Normal
-0.4
132
Normal
-0.4
618
Normal
-0.4
428
Normal
-0.5
616
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
