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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KDELR2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
126.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
453.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
326.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
298.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
298.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
263.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
253.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
251.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
250.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
250.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
242.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
230.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
228.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
226.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
224.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
224.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
224.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
224.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
223.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
219.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
218.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
216.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
216.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
214.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
213.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
209.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
207.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
206.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
206.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
203.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
202.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
199.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
198.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
195.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
193.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
191.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
188.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
188.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
187.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
187.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
185.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
184.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
184.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
184.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
183.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
182.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
182.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
181.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
180.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
179.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
178.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
177.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
175.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
175.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
174.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
174.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
174.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
173.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
172.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
171.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
169.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
169.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
169.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
168.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
168.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
166.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
166.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
164.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
164.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
164.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
163.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
163.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
162.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
162.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
162.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
161.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
160.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
159.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
159.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
158.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
158.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
158.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
156.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
155.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
154.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
153.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
151.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
150.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
148.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
148.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
148.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
148.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
147.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
147.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
145.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
145.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
145.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
145.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
145.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
144.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
144.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
143.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
143.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
143.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
143.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
143.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
142.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
142.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
142.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
142.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
141.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
141.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
141.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
140.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
140.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
140.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
140.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
139.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
138.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
138.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
137.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
136.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
135.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
135.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
135.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
134.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
133.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
132.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
132.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
132.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
132.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
131.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
130.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
129.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
128.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
128.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
128.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
127.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
127.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
127.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
127.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
127.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
126.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
126.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
126.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
126.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
126.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
126.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
126.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
125.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
125.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
125.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
125.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
125.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
125.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
125.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
124.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
124.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
123.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
123.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
123.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
123.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
123.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
123.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
122.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
122.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
122.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
121.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
121.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
121.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
120.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
120.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
120.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
120.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
120.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
120.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
119.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
119.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
119.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
119.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
119.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
118.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
118.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
118.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
117.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
117.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
116.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
116.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
115.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
115.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
115.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
114.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
114.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
114.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
114.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
114.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
113.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
113.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
113.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
112.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
112.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
112.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
111.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
111.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
111.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
111.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
111.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
111.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
110.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
110.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
110.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
110.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
109.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
109.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
109.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
109.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
109.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
108.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
108.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
108.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
108.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
108.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
107.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
107.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
107.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
106.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
106.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
105.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
105.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
105.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
105.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
105.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
105.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
104.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
104.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
104.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
104.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
104.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
103.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
103.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
103.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
102.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
102.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
101.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
100.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
100.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
98.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
98.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
97.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
97.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
97.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
97.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
97.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
97.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
97.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
96.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
96.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
96.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
96.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
95.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
94.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
94.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
94.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
94.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
93.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
93.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
93.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
93.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
93.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
92.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
92.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
92.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
92.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
92.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
92.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
92.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
92.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
91.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
91.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
91.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
91.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
90.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
90.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
89.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
89.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
89.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
89.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
89.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
88.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
88.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
87.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
87.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
86.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
86.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
86.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
85.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
85.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
84.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
84.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
83.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
83.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
83.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
83.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
83.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
81.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
81.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
81.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
80.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
80.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
79.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
78.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
78.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
78.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
77.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
77.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
77.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
77.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
76.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
75.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
75.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
75.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
75.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
73.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
73.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
73.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
73.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
72.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
71.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
71.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
71.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
70.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
70.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
70.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
70.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
70.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
69.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
67.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
67.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
66.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
66.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
66.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
65.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
65.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
62.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
61.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
61.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
61.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
60.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
60.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
59.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
59.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
58.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
57.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
55.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
53.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
50.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
50.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
49.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
46.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
43.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
42.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
40.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KDELR2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
119.5
Number of samples
231
Samples
Sample
Description
TPM
DO48717
0 years, male, NA, stage:4, dead, 180 days
334.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
282.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
274.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
257.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
243.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
225.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
218.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
217.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
213.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
212.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
211.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
210.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
205.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
204.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
196.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
196.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
192.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
186.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
184.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
180.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
180.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
179.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
178.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
177.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
169.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
167.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
167.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
166.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
165.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
163.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
162.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
160.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
160.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
158.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
158.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
157.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
157.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
155.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
155.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
152.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
152.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
152.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
151.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
149.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
148.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
148.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
146.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
146.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
146.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
144.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
142.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
142.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
141.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
139.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
139.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
138.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
138.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
138.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
137.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
137.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
135.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
135.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
135.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
135.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
135.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
134.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
134.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
134.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
133.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
132.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
132.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
131.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
130.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
130.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
130.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
130.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
129.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
129.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
129.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
128.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
127.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
127.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
127.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
127.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
127.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
127.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
126.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
126.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
125.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
124.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
124.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
124.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
123.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
123.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
123.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
123.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
123.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
122.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
120.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
120.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
119.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
118.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
118.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
117.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
117.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
115.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
114.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
114.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
113.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
113.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
113.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
113.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
113.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
113.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
112.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
112.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
110.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
109.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
108.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
108.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
107.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
106.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
106.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
106.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
106.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
105.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
105.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
105.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
105.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
104.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
103.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
103.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
103.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
103.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
102.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
102.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
102.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
102.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
101.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
101.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
101.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
101.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
101.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
101.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
100.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
100.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
100.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
99.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
99.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
98.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
98.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
97.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
97.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
97.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
97.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
96.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
96.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
96.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
96.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
95.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
95.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
95.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
93.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
92.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
92.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
91.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
91.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
91.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
90.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
90.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
89.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
89.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
88.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
88.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
88.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
87.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
87.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
87.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
86.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
86.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
86.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
86.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
86.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
86.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
85.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
85.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
84.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
83.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
83.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
82.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
82.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
80.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
80.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
80.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
79.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
78.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
78.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
77.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
77.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
76.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
74.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
73.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
73.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
73.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
73.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
73.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
72.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
72.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
72.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
72.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
71.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
71.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
71.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
70.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
70.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
68.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
67.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
66.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
64.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
64.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
64.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
63.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
62.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
61.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
60.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
60.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
57.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
55.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
55.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
52.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
49.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
0.8
191
Tumor
0.6
911
Tumor
0.6
223
Tumor
0.5
456
Normal
0.5
147
Tumor
0.4
145
Tumor
0.4
914
Normal
0.4
283
Tumor
0.4
817
Tumor
0.4
271
Tumor
0.4
395
Tumor
0.4
436
Normal
0.4
428
Normal
0.4
227
Tumor
0.4
1025
Tumor
0.4
744
Normal
0.4
913
Tumor
0.3
187
Tumor
0.3
538
Normal
0.3
217
Tumor
0.3
142
Normal
0.3
286
Normal
0.3
823
Tumor
0.3
351
Tumor
0.3
213
Tumor
0.3
446
Normal
0.3
422
Normal
0.2
424
Normal
0.2
427
Tumor
0.2
745
Tumor
0.2
421
Tumor
0.2
461
Tumor
0.2
272
Normal
0.2
573
Tumor
0.2
952
Normal
0.2
385
Tumor
0.2
195
Tumor
0.2
368
Normal
0.2
463
Tumor
0.2
464
Normal
0.2
451
Tumor
0.2
111
Normal
0.2
742
Normal
0.2
267
Tumor
0.2
172
Normal
0.2
816
Normal
0.2
311
Tumor
0.2
268
Normal
0.2
462
Normal
0.2
432
Normal
0.2
713
Tumor
0.2
426
Normal
0.2
222
Normal
0.2
221
Tumor
0.1
162
Normal
0.1
128
Normal
0.1
815
Tumor
0.1
262
Normal
0.1
642
Normal
0.1
445
Tumor
0.1
951
Tumor
0.1
554
Normal
0.1
148
Normal
0.1
567
Tumor
0.1
868
Normal
0.1
1016
Normal
0.1
851
Tumor
0.1
366
Normal
0.1
534
Normal
0.1
647
Tumor
0.1
188
Normal
0.1
327
Tumor
0.1
937
Tumor
0.1
435
Tumor
0.1
968
Normal
0.1
186
Normal
0.1
917
Tumor
0.1
557
Tumor
0.1
383
Tumor
0.1
1045
Tumor
0.1
824
Normal
0.1
257
Tumor
0.1
813
Tumor
0.1
481
Tumor
0.1
877
Tumor
0.1
574
Normal
0.1
434
Normal
0.1
738
Normal
0.1
342
Normal
0.1
857
Tumor
0.1
474
Normal
0.1
277
Tumor
0.0
363
Tumor
0.0
564
Normal
0.0
284
Normal
0.0
365
Tumor
0.0
666
Normal
0.0
627
Tumor
0.0
218
Normal
0.0
954
Normal
0.0
413
Tumor
0.0
452
Normal
0.0
755
Tumor
0.0
671
Tumor
0.0
423
Tumor
0.0
467
Tumor
0.0
1043
Tumor
0.0
737
Tumor
0.0
778
Normal
0.0
414
Normal
0.0
863
Tumor
0.0
124
Normal
0.0
212
Normal
0.0
433
Tumor
0.0
912
Normal
0.0
232
Normal
0.0
743
Tumor
0.0
563
Tumor
0.0
477
Tumor
0.0
662
Normal
0.0
982
Normal
0.0
664
Normal
0.0
482
Normal
0.0
146
Normal
0.0
517
Tumor
0.0
546
Normal
0.0
228
Normal
0.0
943
Tumor
0.0
443
Tumor
0.0
343
Tumor
0.0
137
Tumor
0.0
298
Normal
0.0
526
Normal
0.0
978
Normal
0.0
341
Tumor
0.0
498
Normal
0.0
384
Normal
-0.1
354
Normal
-0.1
491
Tumor
-0.1
523
Tumor
-0.1
412
Normal
-0.1
746
Normal
-0.1
113
Tumor
-0.1
814
Normal
-0.1
468
Normal
-0.1
444
Normal
-0.1
977
Tumor
-0.1
258
Normal
-0.1
472
Normal
-0.1
261
Tumor
-0.1
344
Normal
-0.1
278
Normal
-0.1
125
Tumor
-0.1
138
Normal
-0.1
136
Normal
-0.1
392
Normal
-0.1
484
Normal
-0.1
355
Tumor
-0.1
331
Tumor
-0.1
963
Tumor
-0.1
391
Tumor
-0.1
297
Tumor
-0.1
918
Normal
-0.1
515
Tumor
-0.1
196
Normal
-0.1
665
Tumor
-0.1
1014
Normal
-0.1
488
Normal
-0.1
328
Normal
-0.1
966
Normal
-0.1
975
Tumor
-0.1
132
Normal
-0.1
1042
Normal
-0.1
185
Tumor
-0.1
1026
Normal
-0.1
492
Normal
-0.1
641
Tumor
-0.1
528
Normal
-0.1
361
Tumor
-0.1
114
Normal
-0.1
921
Tumor
-0.1
636
Normal
-0.1
455
Tumor
-0.1
358
Normal
-0.1
571
Tumor
-0.1
364
Normal
-0.1
984
Normal
-0.1
786
Normal
-0.1
141
Tumor
-0.1
353
Tumor
-0.1
425
Tumor
-0.1
722
Normal
-0.1
362
Normal
-0.1
818
Normal
-0.1
387
Tumor
-0.1
494
Normal
-0.1
862
Normal
-0.1
447
Tumor
-0.2
724
Normal
-0.2
545
Tumor
-0.2
525
Tumor
-0.2
473
Tumor
-0.2
944
Normal
-0.2
352
Normal
-0.2
376
Normal
-0.2
161
Tumor
-0.2
861
Tumor
-0.2
396
Normal
-0.2
466
Normal
-0.2
224
Normal
-0.2
572
Normal
-0.2
878
Normal
-0.2
672
Normal
-0.2
192
Normal
-0.2
388
Normal
-0.2
858
Normal
-0.2
533
Tumor
-0.2
416
Normal
-0.2
357
Tumor
-0.2
685
Tumor
-0.2
568
Normal
-0.2
983
Tumor
-0.2
214
Normal
-0.2
1041
Tumor
-0.2
211
Tumor
-0.2
487
Tumor
-0.2
393
Tumor
-0.2
126
Normal
-0.2
471
Tumor
-0.2
852
Normal
-0.2
313
Tumor
-0.2
415
Tumor
-0.2
926
Normal
-0.2
1027
Tumor
-0.2
135
Tumor
-0.2
127
Tumor
-0.2
1022
Normal
-0.2
448
Normal
-0.2
524
Normal
-0.2
938
Normal
-0.2
312
Normal
-0.2
663
Tumor
-0.2
728
Normal
-0.2
356
Normal
-0.2
741
Tumor
-0.3
866
Normal
-0.3
956
Normal
-0.3
648
Normal
-0.3
386
Normal
-0.3
527
Tumor
-0.3
171
Tumor
-0.3
483
Tumor
-0.3
518
Normal
-0.3
394
Normal
-0.3
864
Normal
-0.3
536
Normal
-0.3
964
Normal
-0.3
478
Normal
-0.3
616
Normal
-0.3
721
Tumor
-0.3
1028
Normal
-0.3
375
Tumor
-0.3
727
Tumor
-0.3
314
Normal
-0.3
723
Tumor
-0.3
955
Tumor
-0.3
123
Tumor
-0.3
874
Normal
-0.3
965
Tumor
-0.3
493
Tumor
-0.3
1015
Tumor
-0.3
967
Tumor
-0.3
411
Tumor
-0.3
628
Normal
-0.3
696
Normal
-0.3
1013
Tumor
-0.3
618
Normal
-0.4
882
Normal
-0.4
615
Tumor
-0.4
881
Tumor
-0.4
617
Tumor
-0.4
112
Tumor
-0.4
513
Tumor
-0.4
883
Tumor
-0.4
714
Normal
-0.4
715
Tumor
-0.4
884
Normal
-0.4
661
Tumor
-0.4
785
Tumor
-0.4
332
Normal
-0.4
431
Tumor
-0.4
553
Tumor
-0.4
958
Normal
-0.4
635
Tumor
-0.4
231
Tumor
-0.4
686
Normal
-0.4
981
Tumor
-0.4
516
Normal
-0.4
1032
Normal
-0.4
924
Normal
-0.5
537
Tumor
-0.5
697
Tumor
-0.5
465
Tumor
-0.5
873
Tumor
-0.5
865
Tumor
-0.5
976
Normal
-0.5
1021
Tumor
-0.5
957
Tumor
-0.5
558
Normal
-0.5
497
Tumor
-0.5
867
Tumor
-0.5
367
Tumor
-0.5
916
Normal
-0.5
716
Normal
-0.5
756
Normal
-0.5
922
Normal
-0.5
131
Tumor
-0.5
777
Tumor
-0.5
1046
Normal
-0.5
514
Normal
-0.5
698
Normal
-0.5
915
Tumor
-0.6
923
Tumor
-0.6
953
Tumor
-0.6
535
Tumor
-0.6
925
Tumor
-0.7
1044
Normal
-0.7
695
Tumor
-0.8
1031
Tumor
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.