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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
48.2
Sample id
Sample description
nTPM
Amygdala nTPM: 48.2
2814
Male, age 76, right hemisphere
63.4
2514
Male, age 75, right hemisphere
46.6
2517
Female, age 94, left hemisphere
45.3
2695
Female, age 67, right hemisphere
43.2
1987
Female, age 91, left hemisphere
42.8
Basal amygdala nTPM: 41.0
1955
Male, age 76, both hemispheres
49.5
2609
Male, age 75, right hemisphere
46.0
2110
Male, age 80, left hemisphere
41.6
2243
Female, age 91, right hemisphere
39.3
2685
Female, age 94, left hemisphere
36.4
2827
Female, age 67, right hemisphere
33.3
Central amygdala nTPM: 45.1
1905
Male, age 76, both hemispheres
62.5
2515
Male, age 75, right hemisphere
44.5
2239
Male, age 80, left hemisphere
42.9
2701
Female, age 91, right hemisphere
38.3
2826
Female, age 94, left hemisphere
37.5
Corticomedial amygdala nTPM: 44.7
2429
Female, age 94, left hemisphere
51.2
2240
Male, age 76, both hemispheres
50.4
2428
Male, age 75, right hemisphere
50.1
2829
Male, age 80, left hemisphere
43.3
2242
Female, age 91, right hemisphere
40.8
2535
Female, age 67, right hemisphere
32.5
Lateral amygdala nTPM: 43.1
1883
Male, age 76, both hemispheres
58.6
2516
Male, age 75, right hemisphere
53.3
2534
Female, age 94, left hemisphere
39.2
2830
Female, age 67, right hemisphere
37.2
2255
Female, age 91, right hemisphere
36.9
2256
Male, age 80, left hemisphere
33.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30.8
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 30.8
Samples: 152
Max nTPM: 71.5
Min nTPM: 14.2
Std nTPM: 8.0
Median nTPM: 29.7
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
71.5
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
56.0
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
53.7
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
47.5
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
46.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
45.6
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
44.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
44.3
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
42.4
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
42.0
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
41.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
41.5
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
41.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
41.3
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
40.8
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
40.2
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
40.2
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
40.1
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
40.1
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
39.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
39.6
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
39.0
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
38.5
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
38.3
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
37.7
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
37.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
37.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
37.1
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
37.0
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
36.7
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
36.7
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
36.6
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
36.6
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
36.6
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
36.2
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
36.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
36.0
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
35.9
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
35.9
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
35.8
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
35.8
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
35.8
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
35.3
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
35.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
35.0
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
34.7
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
34.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
34.4
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
34.1
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
33.9
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
33.9
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
33.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
33.7
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
33.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
32.9
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
32.7
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
32.7
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
32.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
32.6
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
32.5
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
32.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
32.5
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
32.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
31.5
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
31.5
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
31.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
31.1
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
31.0
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
31.0
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
30.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
30.6
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
30.5
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
30.2
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
30.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
30.0
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
29.9
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
29.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
29.5
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
29.2
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
29.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
28.8
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
28.8
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
28.5
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
28.3
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
28.2
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
28.1
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
28.1
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
27.9
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
27.9
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
27.8
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
27.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
27.5
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
27.5
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
27.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
27.2
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
27.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
27.0
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
26.8
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
26.6
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
26.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
26.3
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
26.2
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
25.9
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
25.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
25.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
25.8
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
25.7
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
25.6
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
25.6
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
25.6
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
25.5
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
25.5
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
25.4
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
25.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
25.2
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
25.2
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
25.0
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
25.0
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
24.9
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
24.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
24.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
24.5
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
24.4
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
24.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
23.4
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
23.3
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
23.1
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
23.0
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
23.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
23.0
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
22.9
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
22.8
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
22.8
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
22.7
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
22.5
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
22.4
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
22.1
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
22.1
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
21.9
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
21.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
21.1
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
21.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
20.7
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
20.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
20.2
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
19.6
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
19.4
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
19.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
18.7
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
18.5
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
16.8
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
14.2
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
139.8
Mouse sample
Sample description
nTPM
Amygdala nTPM: 139.8
Samples: 4
Max nTPM: 150.2
Min nTPM: 135.9
Sample A
Male
150.2
Sample B
Male
135.9
Sample C
Female
137.1
Sample D
Female
135.9
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.