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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
25.8
nTPM
HPA Brain:
20.3
nTPM
GTEx:
25.8
nTPM
FANTOM5:
30.3
Scaled Tags Per Million
Pig:
40.1
nTPM
Mouse:
40.0
nTPM
Allen mouse:
2.8
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody CAB013116
Antibody CAB069405
Glial cells
Not detected
Not detected
Neuronal cells
Not detected
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
20.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 20.3
1898
Male, age 80, left hemisphere
21.2
2148
Female, age 91, left hemisphere
21.2
2621
Female, age 67, right hemisphere
21.2
2529
Female, age 94, left hemisphere
20.2
1855
Male, age 76, left hemisphere
19.2
1911
Female, age 85, right hemisphere
18.8
Dentate gyrus nTPM: 18.9
2010
Male, age 76, both hemispheres
20.9
2528
Male, age 74, both hemispheres
20.5
2246
Female, age 85, both hemispheres
20.0
2530
Female, age 94, left hemisphere
18.6
2531
Female, age 67, both hemispheres
17.4
1927
Female, age 91, both hemispheres
15.8
Entorhinal gyrus nTPM: 19.4
2117
Female, age 91, right hemisphere
24.8
1787
Male, age 76, left hemisphere
21.2
1938
Female, age 85, left hemisphere
19.9
2686
Male, age 75, right hemisphere
18.6
2764
Male, age 80, right hemisphere
16.9
2613
Female, age 94, left hemisphere
14.9
Hippocampus, CA1 nTPM: 18.6
2045
Male, age 76, both hemispheres
19.8
2082
Female, age 91, right hemisphere
19.7
2527
Male, age 74, both hemispheres
19.5
1873
Female, age 85, both hemispheres
17.4
2749
Male, age 80, left hemisphere
16.5
Hippocampus, CA2 nTPM: 18.6
1892
Male, age 76, both hemispheres
22.0
2113
Female, age 91, right hemisphere
18.6
1963
Male, age 80, left hemisphere
18.4
2249
Male, age 74, both hemispheres
18.4
1940
Female, age 85, left hemisphere
17.5
2437
Female, age 94, left hemisphere
16.6
Hippocampus, CA3 nTPM: 19.3
1891
Female, age 85, both hemispheres
22.0
1867
Male, age 76, both hemispheres
21.0
2620
Female, age 94, left hemisphere
20.9
2861
Female, age 67, both hemispheres
18.8
2436
Male, age 74, both hemispheres
18.5
2137
Male, age 80, left hemisphere
14.7
Parahippocampal cortex nTPM: 16.7
2018
Male, age 76, both hemispheres
22.7
2250
Female, age 67, right hemisphere
19.4
1850
Male, age 80, both hemispheres
17.4
2692
Male, age 74, both hemispheres
17.2
1990
Female, age 91, right hemisphere
16.9
2622
Female, age 67, right hemisphere
16.1
2532
Female, age 72, left hemisphere
15.2
2693
Female, age 94, both hemispheres
14.7
1933
Female, age 85, both hemispheres
14.2
2245
Female, age 91, both hemispheres
13.5
Perirhinal gyrus nTPM: 16.1
1841
Female, age 85, right hemisphere
17.1
1794
Male, age 80, right hemisphere
17.0
1847
Female, age 91, left hemisphere
16.5
2848
Male, age 76, right hemisphere
15.1
2521
Female, age 94, right hemisphere
14.7
Subiculum nTPM: 19.9
2729
Female, age 91, right hemisphere
23.4
2042
Male, age 76, both hemispheres
23.0
2619
Male, age 74, both hemispheres
22.2
1901
Male, age 80, both hemispheres
19.0
1977
Female, age 85, both hemispheres
18.9
2438
Female, age 94, left hemisphere
12.8
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
25.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 25.8
Samples: 197
Max nTPM: 49.9
Min nTPM: 15.1
Std nTPM: 4.9
Median nTPM: 25.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
49.9
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
38.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
37.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
37.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
36.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
34.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
34.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
34.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
34.2
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
33.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
33.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
33.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
33.5
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
33.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
33.3
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
33.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
33.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
32.6
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
32.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
31.8
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
31.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
31.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
31.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
31.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
31.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
31.3
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
31.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
31.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
30.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
30.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
30.5
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
30.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
30.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
30.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
29.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
29.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
29.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
29.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
29.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
29.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
29.5
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
29.5
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
29.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
29.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
29.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
29.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
29.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
29.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
29.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
29.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
28.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
28.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
28.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
28.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
28.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
28.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
28.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
28.1
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
28.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
27.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
27.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
27.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
27.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
27.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
27.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
27.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
27.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
27.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
27.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
27.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
27.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
27.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
27.2
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
27.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
27.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
27.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
27.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
26.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
26.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
26.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
26.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
26.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
26.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
26.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
26.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
26.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
26.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
26.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
26.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
25.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
25.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
25.7
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
25.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
25.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
25.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
25.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
25.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
25.4
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
25.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
25.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
25.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
25.2
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
25.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
25.1
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
25.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
25.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
25.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
24.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
24.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
24.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
24.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
24.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
24.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
24.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
24.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
24.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
24.4
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
24.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
24.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
24.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
24.2
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
24.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
24.1
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
24.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
24.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
24.0
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
23.9
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
23.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
23.6
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
23.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
23.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
23.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
23.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
23.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
23.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
23.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
23.1
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
23.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
23.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
23.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
23.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
23.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
22.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
22.9
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
22.7
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
22.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
22.7
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
22.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
22.5
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
22.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
22.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
21.9
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
21.9
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
21.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
21.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
21.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
21.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
21.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
21.3
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
21.3
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
21.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
21.0
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
20.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
20.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
20.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
20.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
20.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
20.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
20.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
20.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
20.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
20.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
20.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
20.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
20.1
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
20.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
19.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
19.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
19.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
19.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
19.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
19.2
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
19.0
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
19.0
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
19.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
18.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
18.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
18.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
18.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
17.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
17.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
17.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
17.3
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
16.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
16.5
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
16.4
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
15.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
40.0
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 34.2
Samples: 4
Max nTPM: 36.2
Min nTPM: 30.2
Sample A
Male
30.2
Sample B
Male
34.9
Sample C
Female
36.2
Sample D
Female
35.4
Hippocampal formation nTPM: 40.0
Samples: 4
Max nTPM: 44.1
Min nTPM: 36.7
Sample A
Male
36.7
Sample B
Male
38.2
Sample C
Female
44.1
Sample D
Female
40.8
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.