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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
93.3
nTPM
HPA Brain:
312.1
nTPM
GTEx:
93.3
nTPM
FANTOM5:
308.3
Scaled Tags Per Million
Pig:
171.8
nTPM
Mouse:
177.7
nTPM
Allen mouse:
17.8
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA006889
Antibody CAB011498
Glial cells
Low
Medium
Neuronal cells
High
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
312.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 267.1
1855
Male, age 76, left hemisphere
318.6
1898
Male, age 80, left hemisphere
295.6
1911
Female, age 85, right hemisphere
283.0
2621
Female, age 67, right hemisphere
275.8
2148
Female, age 91, left hemisphere
232.8
2529
Female, age 94, left hemisphere
196.9
Dentate gyrus nTPM: 283.0
2010
Male, age 76, both hemispheres
380.3
2530
Female, age 94, left hemisphere
322.5
1927
Female, age 91, both hemispheres
301.8
2531
Female, age 67, both hemispheres
247.2
2246
Female, age 85, both hemispheres
227.2
2528
Male, age 74, both hemispheres
218.9
Entorhinal gyrus nTPM: 202.5
2117
Female, age 91, right hemisphere
249.5
1938
Female, age 85, left hemisphere
221.2
2764
Male, age 80, right hemisphere
208.3
1787
Male, age 76, left hemisphere
197.4
2613
Female, age 94, left hemisphere
187.8
2686
Male, age 75, right hemisphere
151.2
Hippocampus, CA1 nTPM: 312.1
2749
Male, age 80, left hemisphere
539.4
1873
Female, age 85, both hemispheres
326.9
2045
Male, age 76, both hemispheres
302.5
2527
Male, age 74, both hemispheres
210.5
2082
Female, age 91, right hemisphere
181.3
Hippocampus, CA2 nTPM: 266.4
1963
Male, age 80, left hemisphere
404.7
1892
Male, age 76, both hemispheres
348.6
1940
Female, age 85, left hemisphere
222.2
2249
Male, age 74, both hemispheres
213.0
2113
Female, age 91, right hemisphere
207.2
2437
Female, age 94, left hemisphere
202.4
Hippocampus, CA3 nTPM: 285.5
2137
Male, age 80, left hemisphere
460.4
1867
Male, age 76, both hemispheres
293.9
1891
Female, age 85, both hemispheres
288.3
2620
Female, age 94, left hemisphere
254.5
2861
Female, age 67, both hemispheres
229.7
2436
Male, age 74, both hemispheres
186.0
Parahippocampal cortex nTPM: 185.8
2018
Male, age 76, both hemispheres
244.3
1990
Female, age 91, right hemisphere
206.3
2245
Female, age 91, both hemispheres
205.5
1850
Male, age 80, both hemispheres
203.1
1933
Female, age 85, both hemispheres
186.9
2532
Female, age 72, left hemisphere
184.0
2693
Female, age 94, both hemispheres
181.4
2692
Male, age 74, both hemispheres
177.8
2250
Female, age 67, right hemisphere
153.7
2622
Female, age 67, right hemisphere
114.7
Perirhinal gyrus nTPM: 185.1
2521
Female, age 94, right hemisphere
207.2
1841
Female, age 85, right hemisphere
187.9
2848
Male, age 76, right hemisphere
183.0
1847
Female, age 91, left hemisphere
177.4
1794
Male, age 80, right hemisphere
170.2
Subiculum nTPM: 260.8
2042
Male, age 76, both hemispheres
352.6
1901
Male, age 80, both hemispheres
352.0
1977
Female, age 85, both hemispheres
249.8
2438
Female, age 94, left hemisphere
220.7
2729
Female, age 91, right hemisphere
220.2
2619
Male, age 74, both hemispheres
169.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
93.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 93.3
Samples: 197
Max nTPM: 175.8
Min nTPM: 27.5
Std nTPM: 31.4
Median nTPM: 91.7
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
175.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
161.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
158.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
158.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
156.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
154.1
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
153.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
153.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
151.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
149.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
147.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
145.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
144.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
143.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
143.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
141.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
141.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
140.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
138.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
137.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
137.5
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
137.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
135.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
135.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
135.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
134.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
134.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
133.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
131.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
130.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
129.2
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
128.8
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
128.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
126.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
125.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
125.1
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
124.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
123.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
123.1
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
122.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
122.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
121.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
121.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
121.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
120.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
120.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
118.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
117.6
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
117.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
113.5
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
113.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
112.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
112.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
112.2
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
111.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
111.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
110.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
110.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
109.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
109.2
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
109.2
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
108.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
106.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
105.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
105.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
105.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
104.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
104.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
103.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
102.7
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
102.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
101.9
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
101.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
101.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
100.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
100.0
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
99.9
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
99.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
98.8
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
98.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
98.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
97.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
97.4
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
96.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
96.1
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
96.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
96.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
95.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
95.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
95.1
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
94.3
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
93.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
93.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
93.2
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
92.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
92.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
92.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
91.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
91.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
91.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
90.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
89.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
89.0
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
88.9
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
88.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
88.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
88.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
87.5
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
87.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
87.1
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
87.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
86.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
85.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
85.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
85.4
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
84.6
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
84.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
83.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
83.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
83.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
82.9
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
82.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
81.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
81.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
81.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
80.5
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
80.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
79.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
78.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
78.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
77.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
77.5
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
76.8
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
75.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
74.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
74.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
73.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
72.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
72.5
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
72.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
71.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
70.5
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
70.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
69.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
69.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
69.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
68.7
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
68.2
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
67.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
67.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
67.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
66.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
66.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
65.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
64.7
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
62.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
62.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
61.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
61.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
61.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
60.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
60.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
60.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
60.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
59.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
59.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
59.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
58.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
58.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
58.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
58.2
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
57.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
56.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
55.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
55.5
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
54.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
54.1
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
53.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
53.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
52.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
52.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
52.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
52.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
50.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
49.5
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
48.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
47.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
46.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
45.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
44.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
44.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
41.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
41.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
38.8
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
36.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
30.6
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
27.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
177.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 155.2
Samples: 4
Max nTPM: 195.6
Min nTPM: 139.4
Sample A
Male
146.0
Sample B
Male
139.7
Sample C
Female
139.4
Sample D
Female
195.6
Hippocampal formation nTPM: 177.7
Samples: 4
Max nTPM: 233.4
Min nTPM: 137.9
Sample A
Male
137.9
Sample B
Male
195.9
Sample C
Female
233.4
Sample D
Female
143.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.