MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.8 nTPM
HPA Brain:102.2 nTPM
GTEx:34.8 nTPM
FANTOM5:102.0 Scaled Tags Per Million
Mouse:7.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 102.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.6
2828 Female, age 72, unknown 89.8
2586 Male, age 75, left hemisphere 86.2
2219 Male, age 76, both hemispheres 81.9
1833 Male, age 53, unknown 77.6
1827 Male, age 72, unknown 75.7
1830 Male, age 51, unknown 75.1
2666 Male, age 74, left hemisphere 73.8
2411 Female, age 72, unknown 73.3
1870 Female, age 42, unknown 71.5
2019 Male, age 18, unknown 61.3
Dorsal raphe nucleus
nTPM: 80.8
2016 Female, age 72, unknown 82.7
2298 Female, age 72, unknown 82.5
1828 Male, age 53, unknown 80.6
2047 Male, age 72, unknown 80.4
2750 Male, age 76, both hemispheres 77.6
Inferior colliculus
nTPM: 75.9
2849 Male, age 72, unknown 87.7
1848 Female, age 42, unknown 81.9
1890 Male, age 53, unknown 71.9
2097 Female, age 72, unknown 62.3
Median raphe nucleus
nTPM: 64.8
2220 Male, age 76, midline 64.8
Periaquaductal grey, anterior
nTPM: 80.9
1947 Male, age 18, unknown 90.6
1795 Male, age 51, unknown 84.3
2502 Female, age 75, unknown 67.7
Periaquaductal grey, dorsal
nTPM: 85.0
2850 Male, age 76, both hemispheres 105.7
1840 Male, age 53, unknown 82.1
2464 Female, age 72, unknown 76.6
1831 Male, age 72, unknown 75.6
Periaquaductal grey, lateral
nTPM: 102.2
2140 Male, age 76, both hemispheres 113.0
2272 Male, age 74, both hemispheres 99.7
2053 Male, age 18, unknown 94.0
Pretectal area
nTPM: 77.1
2273 Male, age 74, both hemispheres 93.4
2316 Male, age 76, right hemisphere 85.8
2667 Female, age 75, unknown 85.2
2825 Male, age 18, unknown 81.0
1944 Female, age 72, unknown 76.3
1815 Male, age 53, unknown 74.1
2224 Female, age 72, unknown 73.7
1816 Male, age 51, unknown 72.7
2407 Male, age 75, both hemispheres 70.9
1817 Female, age 42, unknown 67.3
2007 Male, age 72, unknown 67.3
Red nucleus
nTPM: 81.0
2823 Male, age 76, right hemisphere 93.0
2725 Female, age 75, unknown 90.8
2769 Male, age 72, unknown 89.5
2588 Male, age 74, left hemisphere 83.8
2503 Female, age 72, unknown 83.5
1904 Male, age 53, unknown 82.9
1865 Male, age 51, unknown 81.4
2227 Male, age 72, unknown 80.5
1954 Female, age 42, unknown 78.7
1821 Female, age 72, unknown 74.8
2785 Male, age 18, unknown 67.2
2584 Male, age 75, left hemisphere 66.3
Substantia nigra
nTPM: 76.8
2699 Male, age 18, unknown 96.1
2590 Female, age 75, unknown 82.6
1916 Female, age 42, unknown 76.9
1851 Male, age 51, unknown 76.1
2241 Male, age 72, unknown 74.8
2409 Female, age 72, unknown 73.5
2583 Male, age 75, right hemisphere 73.4
2665 Male, age 74, both hemispheres 72.9
1941 Male, age 53, unknown 71.8
1889 Female, age 72, unknown 69.7
Superior colliculus
nTPM: 78.0
2261 Male, age 18, unknown 84.1
1913 Female, age 42, unknown 83.0
1796 Male, age 53, unknown 82.0
2087 Female, age 72, unknown 81.4
1995 Male, age 72, unknown 79.2
1839 Male, age 51, unknown 78.8
1895 Male, age 76, right hemisphere 77.9
2664 Male, age 75, both hemispheres 74.8
2587 Male, age 74, left hemisphere 70.9
2668 Female, age 75, unknown 68.2
Ventral tegmental area
nTPM: 75.2
2021 Male, age 53, unknown 81.0
1942 Male, age 51, unknown 75.3
2410 Female, age 72, unknown 74.9
2223 Female, age 72, unknown 74.3
1915 Female, age 42, unknown 73.1
2218 Male, age 76, both hemispheres 72.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 34.8
GTEx sample id Sample description nTPM
26.431.640.318.658.701020304050607080
Brain - Substantia nigra
Average nTPM: 34.8
Samples: 139

Max nTPM: 81.0
Min nTPM: 18.6
Std nTPM: 11.9
Median nTPM: 31.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 81.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 77.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 74.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 69.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 64.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 63.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 58.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 58.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 57.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 52.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 52.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 102.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.0
FF:10158-103A5 76 years, female 102.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.3
Samples: 4

Max nTPM: 7.8
Min nTPM: 6.4
Sample A Male 6.4
Sample B Male 7.5
Sample C Female 7.8
Sample D Female 7.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70445544 Antisense, RP_050614_04_A10, Mouse strain C57BL/6J (56 days, male) 0.1

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