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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
71.3
nTPM
Monaco:
58.6
nTPM
Schmiedel:
38.3
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.3
HPA sample
nTPM
gdT-cell nTPM: 58.8
Samples: 6
Max nTPM: 81.2
Min nTPM: 30.7
P10809_1007
30.7
P10809_1022
71.3
P10809_1041
81.2
P10809_1060
60.7
P10809_1077
50.4
P10809_1098
58.5
MAIT T-cell nTPM: 63.6
Samples: 6
Max nTPM: 79.2
Min nTPM: 33.1
P10809_1006
33.1
P10809_1024
77.4
P10809_1043
72.4
P10809_1062
60.8
P10809_1083
58.4
P10809_1097
79.2
Memory CD4 T-cell nTPM: 55.4
Samples: 6
Max nTPM: 74.5
Min nTPM: 32.2
P10809_1014
32.2
P10809_1026
62.3
P10809_1045
74.5
P10809_1064
50.2
P10809_1086
52.2
P10809_1113
61.0
Memory CD8 T-cell nTPM: 56.2
Samples: 5
Max nTPM: 74.7
Min nTPM: 37.3
P10809_1012
37.3
P10809_1027
42.8
P10809_1046
74.7
P10809_1065
56.7
P10809_1111
69.5
Naive CD4 T-cell nTPM: 54.2
Samples: 6
Max nTPM: 67.2
Min nTPM: 24.8
P10809_1015
24.8
P10809_1030
54.2
P10809_1049
67.2
P10809_1068
51.5
P10809_1085
66.6
P10809_1112
60.8
Naive CD8 T-cell nTPM: 50.3
Samples: 6
Max nTPM: 61.1
Min nTPM: 22.7
P10809_1016
22.7
P10809_1031
53.2
P10809_1050
49.5
P10809_1069
61.1
P10809_1087
58.8
P10809_1110
56.2
T-reg nTPM: 71.3
Samples: 6
Max nTPM: 93.3
Min nTPM: 29.0
P10809_1018
29.0
P10809_1037
64.2
P10809_1056
74.3
P10809_1075
74.9
P10809_1094
92.1
P10809_1106
93.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 42.9
Samples: 4
Max nTPM: 57.0
Min nTPM: 33.7
RHH5202_R3573
57.0
RHH5230_R3602
34.0
RHH5259_R3631
33.7
RHH5288_R3660
46.9
Effector memory CD8 T-cell nTPM: 57.1
Samples: 4
Max nTPM: 67.5
Min nTPM: 48.4
RHH5203_R3574
49.1
RHH5231_R3603
63.5
RHH5260_R3632
48.4
RHH5289_R3661
67.5
MAIT T-cell nTPM: 40.8
Samples: 4
Max nTPM: 56.4
Min nTPM: 19.9
RHH5233_R3605
39.0
RHH5205_R3576
56.4
RHH5262_R3634
48.0
RHH5297_R3663
19.9
Memory CD4 T-cell TFH nTPM: 54.0
Samples: 4
Max nTPM: 63.6
Min nTPM: 47.2
RHH5300_R3666
47.2
RHH5236_R3608
55.8
RHH5265_R3637
49.3
RHH5208_R3579
63.6
Memory CD4 T-cell Th1 nTPM: 42.0
Samples: 4
Max nTPM: 44.6
Min nTPM: 37.2
RHH5210_R3581
44.2
RHH5302_R3668
37.2
RHH5238_R3610
41.9
RHH5267_R3639
44.6
Memory CD4 T-cell Th1/Th17 nTPM: 51.3
Samples: 4
Max nTPM: 65.5
Min nTPM: 45.7
RHH5303_R3669
45.7
RHH5211_R3582
65.5
RHH5239_R3611
47.8
RHH5268_R3640
46.2
Memory CD4 T-cell Th17 nTPM: 51.9
Samples: 4
Max nTPM: 64.6
Min nTPM: 41.7
RHH5304_R3670
59.3
RHH5212_R3583
41.7
RHH5240_R3612
64.6
RHH5269_R3641
41.8
Memory CD4 T-cell Th2 nTPM: 49.3
Samples: 4
Max nTPM: 63.7
Min nTPM: 39.1
RHH5305_R3671
48.2
RHH5213_R3584
46.1
RHH5241_R3613
63.7
RHH5270_R3642
39.1
Naive CD4 T-cell nTPM: 49.5
Samples: 4
Max nTPM: 56.9
Min nTPM: 41.6
RHH5306_R3672
41.6
RHH5214_R3585
56.9
RHH5242_R3614
56.1
RHH5271_R3643
43.3
Naive CD8 T-cell nTPM: 46.1
Samples: 4
Max nTPM: 55.8
Min nTPM: 35.3
RHH5201_R3572
55.8
RHH5229_R3601
35.3
RHH5258_R3630
42.9
RHH5287_R3659
50.4
Non-Vd2 gdTCR nTPM: 55.2
Samples: 4
Max nTPM: 82.6
Min nTPM: 37.0
RHH5235_R3607
48.9
RHH5264_R3636
82.6
RHH5207_R3578
52.3
RHH5299_R3665
37.0
T-reg nTPM: 58.6
Samples: 4
Max nTPM: 66.9
Min nTPM: 37.6
RHH5301_R3667
37.6
RHH5237_R3609
66.5
RHH5266_R3638
63.4
RHH5209_R3580
66.9
Terminal effector memory CD4 T-cell nTPM: 42.5
Samples: 2
Max nTPM: 47.2
Min nTPM: 37.7
RHH5243_R3615
37.7
RHH5272_R3644
47.2
Terminal effector memory CD8 T-cell nTPM: 45.0
Samples: 4
Max nTPM: 54.1
Min nTPM: 35.6
RHH5232_R3604
43.2
RHH5204_R3575
54.1
RHH5261_R3633
47.1
RHH5296_R3662
35.6
Vd2 gdTCR nTPM: 41.5
Samples: 4
Max nTPM: 48.0
Min nTPM: 34.1
RHH5234_R3606
34.1
RHH5206_R3577
48.0
RHH5263_R3635
45.4
RHH5298_R3664
38.3
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
